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(-) Description

Title :  STRUCTURE OF ULK1 BOUND TO A SELECTIVE INHIBITOR
 
Authors :  M. B. Lazarus, K. M. Shokat
Date :  11 Jul 15  (Deposition) - 26 Aug 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Kinase, Autophagy, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. B. Lazarus, K. M. Shokat
Discovery And Structure Of A New Inhibitor Scaffold Of The Autophagy Initiating Kinase Ulk1.
Bioorg. Med. Chem. V. 23 5483 2015
PubMed-ID: 26275681  |  Reference-DOI: 10.1016/J.BMC.2015.07.034

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE ULK1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentKINASE DOMAIN (UNP RESIDUES 1-283)
    GeneULK1, KIAA0722
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,HATG1,UNC-51-LIKE KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
151W1Ligand/IonN-[3-({4-[(3-AMINOPROPYL)AMINO]-5-IODOPYRIMIDIN-2-YL}AMINO)PHENYL]PYRROLIDINE-1-CARBOXAMIDE
2GOL3Ligand/IonGLYCEROL
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:22 , ALA A:44 , MET A:92 , GLU A:93 , TYR A:94 , CYS A:95 , GLY A:98 , ASP A:99 , HIS A:105 , GLN A:142 , LEU A:145 , HOH A:522binding site for residue 51W A 401
2AC2SOFTWAREGLU A:73 , GLU A:93 , PRO A:149 , ARG A:160 , LYS A:162 , ALA A:249 , GLN A:253 , GOL A:403 , HOH A:512 , HOH A:530binding site for residue GOL A 402
3AC3SOFTWARELEU A:41 , GLU A:93 , TYR A:94 , ALA A:249 , GOL A:402 , HOH A:508 , HOH A:511 , HOH A:513 , HOH A:569binding site for residue GOL A 403
4AC4SOFTWAREGLY A:23 , ASP A:165 , HOH A:523binding site for residue GOL A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CI7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CI7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CI7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CI7)

(-) Exons   (0, 0)

(no "Exon" information available for 5CI7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeeee..eeeeeeee......eeeeee.hhhhhhhhhhhhhhhhhhhh.........eeeeee....eeeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhee....hhh.eeee.......hhhhheeee......ee.................hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ci7 A   3 PGRGGTETVGKFEFSRKDLIGHGAFAVVFKGRHRAAHDLEVAVKCINKKNLAKSQTLLGKEIKILKELKHENIVALYDFQEMANSVYLVMEYCNGGDLADYLHAMRTLSEDTIRLFLQQIAGAMRLLHSKGIIHRDLKPQNILLSNPAGRRANPNSIRVKIADFGFARYLQSNMMAAtLCGSPMYMAPEVIMSQHYDGKADLWSIGTIVYQCLTGKAPFQASSPQDLRLFYEKNKTLVPTIPRETSAPLRQLLLALLQRNHKDRMDFDEFFHHPFLD 279
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       
                                                                                                                                                                                                           180-TPO                                                                                               

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CI7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CI7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CI7)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ULK1_HUMAN | O753854wno 4wnp

(-) Related Entries Specified in the PDB File

4wno SAME CONSTRUCT WITH A DIFFERENT INHIBITOR BOUND