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(-) Description

Title :  DLK IN COMPLEX WITH INHIBITOR 2-((1-CYCLOPENTYL-5-(1-(OXETAN-3-YL) PIPERIDIN-4-YL)-1H-PYRAZOL-3-YL)AMINO)ISONICOTINONITRILE
 
Authors :  S. F. Harris, J. Yin
Date :  07 Jul 15  (Deposition) - 14 Oct 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Patel, S. F. Harris, P. Gibbons, G. Deshmukh, A. Gustafson, T. Kellar, H. Lin, X. Liu, Y. Liu, Y. Liu, C. Ma, K. Scearce-Levie, A. S. Ghosh, Y. G. Shin, H. Solanoy, J. Wang, B. Wang, J. Yin, M. Siu, J. W. Lewcock
Scaffold-Hopping And Structure-Based Discovery Of Potent, Selective, And Brain Penetrant N-(1H-Pyrazol-3-Yl)Pyridin-2-Amine Inhibitors Of Dual Leucine Zipper Kinase (Dlk, Map3K12).
J. Med. Chem. V. 58 8182 2015
PubMed-ID: 26431428  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01072

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 12
    ChainsA
    EC Number2.7.11.25
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineHI5
    Expression System CommonCABBAGE LOOPER
    Expression System Taxid7111
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN (UNP RESIDUES 115-402)
    GeneMAP3K12, ZPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDUAL LEUCINE ZIPPER BEARING KINASE,DLK,LEUCINE-ZIPPER PROTEIN KINASE,ZPK,MAPK-UPSTREAM KINASE,MUK,MIXED LINEAGE KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
150F1Ligand/Ion2-[[1-CYCLOPENTYL-5-[1-(OXETAN-3-YL)PIPERIDIN-4-YL]PYRAZOL-3-YL]AMINO]PYRIDINE-4-CARBONITRILE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:132 , GLY A:134 , GLN A:136 , VAL A:139 , ALA A:150 , GLU A:191 , PHE A:192 , CYS A:193 , GLY A:196 , GLN A:197 , LYS A:231 , LEU A:243 , HOH A:4161binding site for residue 50F A 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CEQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:183 -Pro A:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CEQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CEQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CEQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhheeeeeeeee..eeeeeeee..eeeeeee..hhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ceq A 117 LWEVPFEEILDLQWVGSGAQGAVFLGRFHGEEVAVKKVRDLKETDIKHLRKLKHPNIITFKGVCTQAPCYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMNYLHLHKIIHRDLKSPNMLITYDDVVKISDFGFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSSCPDGFKILLRQCWNSKPRNRPSFRQILLHLDIASADVLSTPQETYFKSQAEWREEVKLHFEKIK 398
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256|      279       289       299       309       319       329       339       349       359       369       379       389         
                                                                                                                                                                     256|                                                                                                                                
                                                                                                                                                                      270                                                                                                                                

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CEQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CEQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CEQ)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K12_HUMAN | Q128525cen 5ceo 5cep

(-) Related Entries Specified in the PDB File

5cen 5ceo 5cep