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(-) Description

Title :  HUMAN METABOTROPIC GLUTAMATE RECEPTOR 7, EXTRACELLULAR LIGAND BINDING DOMAIN
 
Authors :  A. Dong, E. Dobrovetsky, A. Hutchinson, W. Tempel, A. M. Edwards, C. Bou C. H. Arrowsmith, Structural Genomics Consortium (Sgc)
Date :  19 Jun 15  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Glutamate Receptors, Glutamic Acid Binding, Mglur7, Signaling Protein, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Dobrovetsky, A. Dong, A. Hutchinson, W. Tempel, A. M. Edwards, C. Bountra, C. H. Arrowsmith, Structural Genomics Consortium (Sgc)
Human Metabotropic Glutamate Receptor 7, Extracellular Ligand Binding Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METABOTROPIC GLUTAMATE RECEPTOR 7
    ChainsA
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System PlasmidPFHMSP-LIC-N
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneGRM7, GPRC1G, MGLUR7
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMGLUR7

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4UNX11Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:198 , GLN A:409 , ASP A:413 , THR A:463 , PRO A:464binding site for residue GOL A 602
2AC2SOFTWAREILE A:89 , ASP A:92 , LEU A:95 , LEU A:96 , HOH A:737binding site for residue CA A 603
3AC3SOFTWARELEU A:186 , ASP A:189 , TYR A:192 , PHE A:195 , ARG A:453 , ASN A:470 , HOH A:739binding site for residue CA A 604
4AC4SOFTWAREASN A:98 , ASN A:426 , ASP A:432 , TYR A:433binding site for Mono-Saccharide NAG A 601 bound to ASN A 98

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:67 -A:109
2A:374 -A:390
3A:430 -A:437

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:155 -Ala A:156

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C5C)

(-) Exons   (0, 0)

(no "Exon" information available for 5C5C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eeeeeee..eee......eeee....hhhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhh.......eeeee...hhhhhhhhhhhhhhh...eee....hhhhhh......eee...hhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.....eeeee............eeeee....hhhhhhhhhh..........hhhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..ee.....ee...........eeeeeee....eeeeeeee...eee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c5c A  40 PHSIRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNPGYRLIGQWTDELQLNIEDMQW 511
                                    49        59        69        79        89        99       109       119       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       326       336       346       356       366       376|      396       406       416       426       436       446       456       466       476       486|      499       509  
                                                                                                                 127|                                                                                                                                                                       316|                                               376|                                                                                                486|                     
                                                                                                                  146                                                                                                                                                                        326                                                387                                                                                                 490                     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C5C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C5C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C5C)

(-) Gene Ontology  (46, 46)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:155 - Ala A:156   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRM7_HUMAN | Q148313mq4

(-) Related Entries Specified in the PDB File

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