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(-) Description

Title :  PD-1 BINDING DOMAIN FROM HUMAN PD-L1
 
Authors :  K. M. Zak, G. Dubin, T. A. Holak
Date :  17 Jun 15  (Deposition) - 04 Nov 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Immunology, Ligand, Pd1/Pdl1 Axis, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. M. Zak, R. Kitel, S. Przetocka, P. Golik, K. Guzik, B. Musielak, A. Domling, G. Dubin, T. A. Holak
Structure Of The Complex Of Human Programmed Death 1, Pd-1, And Its Ligand Pd-L1.
Structure V. 23 2341 2015
PubMed-ID: 26602187  |  Reference-DOI: 10.1016/J.STR.2015.09.010

(-) Compounds

Molecule 1 - PROGRAMMED CELL DEATH 1 LIGAND 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System Taxid469008
    FragmentUNP RESIDUES 18-134
    GeneCD274, B7H1, PDCD1L1, PDCD1LG1, PDL1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROGRAMMED DEATH LIGAND 1,B7 HOMOLOG 1,B7-H1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5C3T)

(-) Sites  (0, 0)

(no "Site" information available for 5C3T)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:40 -A:114

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C3T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C3T)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeee....eeeeee.......hhh.eeeeeee..eeeeeee..ee.....hhhhh..eee.hhhhhh.eeeeee...hhhhheeeeeeeee..eeeeeeeeeee.hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c3t A  18 AFTVTVPKDLYVVEYGSNMTIECKFPVEKELDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYAAALEHHHH 143
                                    27        37        47        57        67        77        87        97       107       117       127       137      

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C3T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C3T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C3T)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PD1L1_HUMAN | Q9NZQ73bik 3bis 3fn3 3sbw 4z18 4zqk 5ggt 5grj 5ius 5j89 5j8o 5jdr 5jds 5n2d 5n2f

(-) Related Entries Specified in the PDB File

4zqk