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(-) Description

Title :  CRYSTAL STRUCTURE OF BCL-XL BOUND TO BIM-MM
 
Authors :  J. A. Miles, D. J. Yeo, P. Rowell, S. Rodriguez-Marin, C. M. Pask, S. L. Wa T. A. Edwards, A. J. Wilson
Date :  17 Jun 15  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Complex, Bcl-2 Family, Bh3, Stapled Peptide, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Miles, D. J. Yeo, P. Rowell, S. Rodriguez-Marin, C. M. Pask, S. L. Warriner, T. A. Edwards, A. J. Wilson
Hydrocarbon Constrained Peptides - Understanding Preorganisation And Binding Affinity
Chem Sci 2016
PubMed: search  |  Reference-DOI: 10.1039/C5SC04048E

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1,BCL-2-LIKE PROTEIN 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 1-26,UNP RESIDUES 83-209
    GeneBCL2L1, BCL2L, BCLX, BCL2L1, BCL2L, BCLX
    Organism CommonHOUSE MOUSE, HUMAN
    Organism ScientificMUS MUSCULUS, HOMO SAPIENS
    Organism Taxid10090, 9606
    Other DetailsDELETION MUTATION PERFORMED TO REMOVE FLEXIBLE LOOP, REMOVING RESIDUES 27-82. NUMBERING IS CORRECT IN THE PDB FILE.
    SynonymBCL2-L-1,APOPTOSIS REGULATOR BCL-X, BCL-XL,BCL2-L-1, APOPTOSIS REGULATOR BCL-X,BCL-XL
 
Molecule 2 - BCL-2-LIKE PROTEIN 11
    ChainsB
    EngineeredYES
    FragmentUNP RESIDUES 56-76
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBCL2-L-11,BCL2-INTERACTING MEDIATOR OF CELL DEATH
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NLE2Mod. Amino AcidNORLEUCINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NLE4Mod. Amino AcidNORLEUCINE

(-) Sites  (0, 0)

(no "Site" information available for 5C3G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C3G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C3G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C3G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C3G)

(-) Exons   (0, 0)

(no "Exon" information available for 5C3G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c3g A   3 QSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196
                                    12        22   ||   88        98       108       118       128       138       148       158       168       178       188        
                                                  26|                                                                                                                 
                                                   83                                                                                                                 

Chain B from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 5c3g B  90 IAQELRxIGDxFNAYY 105
                                  | 99|     
                                 96-NLE     
                                    100-NLE 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C3G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C3G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C3G)

(-) Gene Ontology  (117, 199)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q078171bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qve 4qvf 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5fmj 5fmk
        B2CL1_MOUSE | Q643731pq0 1pq1 2bzw 3ihc 3ihd 3ihe 3ihf 3iig 3iih 3ilb 3ilc 4yj4 4yk9
        B2L11_HUMAN | O435211f95 2k7w 2nl9 2v6q 2vm6 2wh6 2yq6 2yq7 3d7v 3fdl 3io8 3io9 3kj0 3kj1 3kj2 4a1u 4a1w 4b4s 4d2m 4qvf 4uf3 4yj4 4zie 4zif 4zih 5agw 5agx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5C3G)