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(-) Description

Title :  MICHAELIS COMPLEX OF TPA-S195A:PAI-1
 
Authors :  L. Gong
Date :  01 Jun 15  (Deposition) - 02 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.16
Chains :  Asym./Biol. Unit :  E,I
Keywords :  Tissue-Type Plasminogen Activator Catalytic Domain, Plasminogen Activator Inhibitor 1, Structure-Activity Relationship, Thrombolysis, Hydrolase Inhibitor-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Gong, M. Liu, T. Zeng, X. Shi, C. Yuan, P. A. Andreasen, M. Huang
Crystal Structure Of The Michaelis Complex Between Tissue-Type Plasminogen Activator And Plasminogen Activator Inhibitor-1
J. Biol. Chem. V. 290 25795 2015
PubMed-ID: 26324706  |  Reference-DOI: 10.1074/JBC.M115.677567

(-) Compounds

Molecule 1 - PLASMINOGEN ACTIVATOR INHIBITOR 1
    ChainsI
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneSERPINE1, PAI1, PLANH1
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPAI-1,ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR,SERPIN E1
 
Molecule 2 - TISSUE-TYPE PLASMINOGEN ACTIVATOR
    ChainsE
    EC Number3.4.21.68
    EngineeredYES
    Expression SystemKOMAGATAELLA PASTORIS CBS 7435
    Expression System StrainX-33
    Expression System Taxid981350
    FragmentUNP RESIDUES 311-562
    GenePLAT
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTPA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit EI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG E:39 , PHE E:40 , PRO I:349 , GLU I:351binding site for residue GOL E 301
2AC2SOFTWAREGLU E:135 , GLU E:137 , HIS E:159 , LEU E:202binding site for residue GOL E 302
3AC3SOFTWARELYS E:36 , HIS E:37 , ARG E:37A , HIS E:63 , ASP E:132 , TRP E:133binding site for residue GOL E 303
4AC4SOFTWAREGLU E:38 , ARG E:70 , HOH E:413binding site for residue GOL E 304
5AC5SOFTWAREGLY E:19 , LEU E:20 , PHE E:21 , PHE E:94 , ASP E:96 , HIS E:144 , LYS E:156binding site for residue PGE E 305

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1E:42 -E:58
2E:136 -E:201
3E:168 -E:182
4E:191 -E:220

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Met I:83 -Gly I:84
2Glu I:313 -Pro I:314
3Ser I:337 -Ser I:338
4Gly E:186D-Pro E:186E
5Pro E:186E-Gln E:186F
6Gly E:219 -Cys E:220

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BRR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BRR)

(-) Exons   (0, 0)

(no "Exon" information available for 5BRR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain E from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhh..eeeeeee......eeeeeeeeeee..eeeehhhhhh...hhh.eeeee............eeeeeeeeee.............eeeeee.............................eeeeee...............eeeeeee.hhhhhhhhhhh.......eeeee.....................eeeeee..eeeeeeeeee..........eeeee...hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5brr E   16 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVALPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLQRTVTDNMLCAGDTRSGGPQANLHDACQGDAGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR  243
                                    25        35  ||||| 40        50        60||||    66        76        86        96       106    |||112       122       132       142       152       162       170       180      186D||||   192       202       212    || 222       232       242 
                                                37A||||                     60A|||                                               110A|||                                                        169A|              186A|||||||                            217|  |                      
                                                 37B|||                      60B||                                                110B||                                                         169B               186B||||||                             219  |                      
                                                  37C||                       60C|                                                 110C|                                                                             186C|||||                               221A                      
                                                   37D|                        60D                                                  110D                                                                              186D||||                                                         
                                                    37E                                                                                                                                                                186E|||                                                         
                                                                                                                                                                                                                        186F||                                                         
                                                                                                                                                                                                                         186G|                                                         
                                                                                                                                                                                                                          186H                                                         

Chain I from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhh...........eeeeee.......hhhhhhhhhhh...eee....hhhhhhhhhhhhhhhh......hhhhhhh.....eeeeeeeeee...........eeeeee.......eeeeeeeeeeeeeeeeeee...eeeeeeeee.hhh.eeeeeeee..............hhhhhhhhhhhheeeeeeeeee.eeeeeeeehhhhhhhh..hhhhh................eeeeeeeeeeee......................eee....eeeeeee.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5brr I    8 VAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIIDRPFLFVVRHNPTGTVLFMGQVMEP  379
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BRR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BRR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BRR)

(-) Gene Ontology  (58, 65)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu I:313 - Pro I:314   [ RasMol ]  
    Gly E:186D - Pro E:186E  [ RasMol ]  
    Gly E:219 - Cys E:220   [ RasMol ]  
    Met I:83 - Gly I:84   [ RasMol ]  
    Pro E:186E - Gln E:186F  [ RasMol ]  
    Ser I:337 - Ser I:338   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAI1_HUMAN | P051211a7c 1b3k 1c5g 1db2 1dvm 1dvn 1lj5 1oc0 3cvm 3eox 3pb1 3q02 3q03 3r4l 3ut3 4aqh 4g8o 4g8r 4ic0 9pai
        TPA_HUMAN | P007501a5h 1bda 1pk2 1pml 1rtf 1tpg 1tpk 1tpm 1tpn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5BRR)