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(-) Description

Title :  CRYSTAL STRUCTURE OF DAPK1 IN COMPLEX WITH LUTEOLIN.
 
Authors :  T. Yokoyama, M. Mizuguchi
Date :  10 Jun 15  (Deposition) - 07 Oct 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Death-Associated Protein Kinase 1, Serine/Threonine Protein Kinase, Natural Flavonoid (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Yokoyama, Y. Kosaka, M. Mizuguchi
Structural Insight Into The Interactions Between Death-Associated Protein Kinase 1 And Natural Flavonoids.
J. Med. Chem. V. 58 7400 2015
PubMed-ID: 26322379  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00893

(-) Compounds

Molecule 1 - DEATH-ASSOCIATED PROTEIN KINASE 1
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-20B(+)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1-285
    GeneDAPK1, DAPK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDAP KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1LU21Ligand/Ion2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-CHROMEN-4-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:19 , ALA A:40 , LYS A:42 , GLU A:64 , LEU A:68 , ILE A:77 , LEU A:93 , GLU A:94 , LEU A:95 , VAL A:96 , ILE A:160 , ASP A:161 , PHE A:162binding site for residue LU2 A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AUU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AUU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AUU)

(-) Exons   (0, 0)

(no "Exon" information available for 5AUU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhh.eeeeeeeeee..eeeeeeee.....eeeeeeee...........hhhhhhhhhhhhhhh.......eeeeee...eeeeeee.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.........eee......ee.................hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhh..hhhhhhhhhh....hhhhh.hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5auu A   2 TVFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKP 277
                                    11        21        31        41        51        61        71        81        91       101     ||113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273    
                                                                                                                                   107|                                                                                                                                                                       
                                                                                                                                    110                                                                                                                                                                       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AUU)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DAPK1_HUMAN | P533551ig1 1jkk 1jkl 1jks 1jkt 1p4f 1wvw 1wvx 1wvy 1yr5 2w4j 2w4k 2x0g 2xuu 2xzs 2y0a 2y4p 2y4v 2yak 3dfc 3dgk 3eh9 3eha 3f5g 3f5u 3gu4 3gu5 3gu6 3gu7 3gu8 3gub 3zxt 4b4l 4pf4 4tl0 4txc 4uv0 4yo4 4ypd 5aut 5auv 5auw 5aux 5auy 5auz 5av0 5av1 5av2 5av3 5av4

(-) Related Entries Specified in the PDB File

5aut 5auv 5auw 5aux 5auy 5auz 5av0 5av1 5av2 5av3 5av4