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(-) Description

Title :  THE STRUCTURE OF THE TRANSTHYRETIN-LIKE DOMAIN OF THE FIRST CATALYTIC DOMAIN OF THE HUMAN CARBOXYPEPTIDASE D
 
Authors :  P. Gallego, J. Garcia-Pardo, J. Lorenzo, F. X. Aviles, S. Ventura, D. R
Date :  18 Sep 15  (Deposition) - 28 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Man Carboxypeptidase D, Ttl, Transthyretin-Like Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Gallego, J. Garcia-Pardo, E. Berenguer, J. Lorenzo, F. X. Aviles, S. Ventura, D. Reverter
The Structure Of The Ttldomain Of The Human Carboxypeptidase D
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE D
    ChainsA, B
    EC Number3.4.17.22
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPET28
    FragmentTRANSTHYRETIN-LIKE DOMAIN, UNP 383-461
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMETALLOCARBOXYPEPTIDASE D, GP180, METALLOCARBOXYPEPTIDASE D , GP180, HUMAN CARBOXYPEPTIDASE D, HUMAN CARBOXYPEPTIDASE D

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:419 , HOH A:2009 , HOH A:2010 , HOH A:2051 , HOH A:2053 , LEU B:434 , GLY B:436 , TYR B:437 , GLU B:449 , HIS B:462BINDING SITE FOR RESIDUE GOL B1464

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AQ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AQ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5AQ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..........eeee......ee.....eeeee...eeeeeeee......eeeeeeee.....ee..eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 5aq0 A 382 SGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRPH 462
                                   391       401       411       421       431       441       451       461 

Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..........eeee..eeeeee.....eeeee...eeeeeeee......eeeeeeee.....ee..eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 5aq0 B 382 SGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRPHH 463
                                   391       401       411       421       431       441       451       461  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQ0)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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