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(-) Description

Title :  NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
 
Authors :  M. D. Gurden, I. M. Westwood, A. Faisal, S. Naud, K. J. Cheung, C. Mcandre J. Schmitt, K. Boxall, G. Mak, P. Workman, R. Burke, S. Hoelder, J. Blag R. L. M. Van Montfort, S. Linardopoulos
Date :  14 Sep 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Mps1, Protein Kinase, Mitosis, Drug Resistance (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. D. Gurden, I. M. Westwood, A. Faisal, S. Naud, K. J. Cheung, C. Mcandrew, A. Wood, J. Schmitt, K. Boxall, G. Mak, P. Workman, R. Burke, S. Hoelder, J. Blagg, R. L. M. Van Montfort, S. Linardopoulo
Naturally Occurring Mutations In The Mps1 Gene Predispose Cells To Kinase Inhibitor Drug Resistance.
Cancer Res. V. 75 3340 2015
PubMed-ID: 26202014  |  Reference-DOI: 10.1158/0008-5472.CAN-14-3272

(-) Compounds

Molecule 1 - DUAL SPECIFICITY PROTEIN KINASE TTK
    ChainsA
    EC Number2.7.12.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VariantAI
    FragmentKINASE DOMAIN, UNP RESIDUES 519-808
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT, MONOPOLAR SPINDLE KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
17PE4Ligand/Ion2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
2AU51Ligand/Ion9-CYCLOPENTYL-2-[[2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]-PHENYL]AMINO]-7-METHYL-7,9-DIHYDRO-8H-PURIN-8-ONE
3DMS1Ligand/IonDIMETHYL SULFOXIDE
4EDO3Ligand/Ion1,2-ETHANEDIOL
5TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:537 , LYS A:553 , VAL A:555 , TYR A:568 , GLU A:571 , MET A:600 , ILE A:663 , AU5 A:1799BINDING SITE FOR RESIDUE 7PE A1795
2AC2SOFTWARETRP A:622 , SER A:626 , LYS A:629 , VAL A:791 , GLN A:792 , ILE A:793 , GLN A:794BINDING SITE FOR RESIDUE 7PE A1796
3AC3SOFTWAREGLN A:548 , ILE A:549 , TYR A:550 , TYR A:589 , GLU A:603 , CYS A:604BINDING SITE FOR RESIDUE 7PE A1797
4AC4SOFTWAREASN A:570 , TYR A:574 , GLY A:642 , GLN A:794BINDING SITE FOR RESIDUE 7PE A1798
5AC5SOFTWAREILE A:531 , GLY A:532 , GLN A:541 , ALA A:551 , ILE A:586 , MET A:602 , GLU A:603 , CYS A:604 , GLY A:605 , ASN A:606 , LEU A:654 , 7PE A:1795BINDING SITE FOR RESIDUE AU5 A1799
6AC6SOFTWARETYR A:525 , TYR A:550 , TYR A:589BINDING SITE FOR RESIDUE DMS A1800
7AC7SOFTWAREASN A:576BINDING SITE FOR RESIDUE EDO A1801
8AC8SOFTWAREASP A:595BINDING SITE FOR RESIDUE EDO A1802
9AC9SOFTWAREARG A:774 , ASP A:775BINDING SITE FOR RESIDUE EDO A1803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AP3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AP3)

(-) Exons   (0, 0)

(no "Exon" information available for 5AP3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeeeeeeeee...eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eeeeee...eeeeee....eehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee....eee................hhhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ap3 A 516 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNGWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANSQVGtVNYMPPEAIKDISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 794
                                   525       535       545       555       565       575       585       595       605       615       625       635       645       655       665   ||  687       697|      720       730       740       750       760       770       780       790    
                                                                                                                                                                                   669|   |        697|                                                                                   
                                                                                                                                                                                    682   |         711                                                                                   
                                                                                                                                                                                        686-TPO                                                                                           

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AP3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AP3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AP3)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTK_HUMAN | P339812x9e 2zmc 2zmd 3cek 3dbq 3gfw 3h9f 3hmn 3hmo 3hmp 3vqu 3w1f 3wyx 3wyy 3wzj 3wzk 4b94 4bhz 4bi0 4bi1 4bi2 4c4e 4c4f 4c4g 4c4h 4c4i 4c4j 4cv8 4cv9 4cva 4d2s 4h7x 4h7y 4js8 4jt3 4o6l 4zeg 5ap0 5ap1 5ap2 5ap4 5ap5 5ap6 5ap7 5eh0 5ehl 5eho 5ehy 5ei2 5ei6 5ei8 5ljj 5n7v 5n84 5n87 5n93 5n9s 5na0 5nad

(-) Related Entries Specified in the PDB File

5ap0 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap1 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap2 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap4 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap5 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap6 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.
5ap7 NATURALLY OCCURRING MUTATIONS IN THE MPS1 GENE PREDISPOSE CELLS TO KINASE INHIBITOR DRUG RESISTANCE.