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(-) Description

Title :  THE DISCOVERY OF 2-SUBSTITUTED PHENOL QUINAZOLINES AS POTENT AND SELECTIVE RET KINASE INHIBITORS
 
Authors :  R. Newton, K. Bowler, E. M. Burns, P. Chapman, E. Fairweather, S. Fritzl K. Goldberg, N. M. Hamilton, S. V. Holt, G. V. Hopkins, S. D. Jones, A. M. A. Lyons, N. Q. Mcdonald, L. A. Maguire, D. P. Mould, A. G. Purkiss, H. F. A. Stowell, G. J. Thomson, I. D. Waddell, B. Waszkowycz, A. J. Watson, D. J. Ogilvie
Date :  11 Mar 15  (Deposition) - 17 Feb 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Ret, Oncogene, Receptor Tyrosine Kinase, Chemical Inhibitor, Cancer (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Newton, K. A. Bowler, E. M. Burns, P. J. Chapman, E. E. Fairweather, S. J. R. Fritzl, K. M. Goldberg, N. M. Hamilton, S. V. Holt, G. V. Hopkins S. D. Jones, A. M. Jordan, A. J. Lyons, H. Nikki March, N. Q. Mcdonald, L. A. Maguire, D. P. Mould, A. G. Purkiss, H. F. Small, A. I. J. Stowell, G. J. Thomson, I. D. Waddell, B. Waszkowycz, A. J. Watson, D. J. Ogilvie
The Discovery Of 2-Substituted Phenol Quinazolines As Potent Ret Kinase Inhibitors With Improved Kdr Selectivity.
Eur. J. Med. Chem. V. 112 20 2016
PubMed-ID: 26874741  |  Reference-DOI: 10.1016/J.EJMECH.2016.01.039

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, RESIDUES 705-826,841-1012
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsPHOSPHORYLATION AT Y900 AND Y905
    SynonymCADHERIN FAMILY MEMBER 12, PROTO-ONCOGENE C-RET

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1DTQ1Ligand/Ion4-[3-HYDROXYANILINO]-6,7-DIMETHOXYQUINAZOLINE
2FMT7Ligand/IonFORMIC ACID
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1DTQ2Ligand/Ion4-[3-HYDROXYANILINO]-6,7-DIMETHOXYQUINAZOLINE
2FMT14Ligand/IonFORMIC ACID
3PTR4Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:700 , PRO A:701 , LEU A:702 , SER A:703 , GLN A:910 , LEU A:923 , PHE A:924 , HIS A:926BINDING SITE FOR RESIDUE FMT A2011
2AC2SOFTWAREARG A:873 , LEU A:895 , LYS A:907 , GLY A:911 , ARG A:912BINDING SITE FOR RESIDUE FMT A2012
3AC3SOFTWAREASP A:707 , LYS A:728 , LYS A:740 , TYR A:806BINDING SITE FOR RESIDUE FMT A2013
4AC4SOFTWAREHOH A:3039BINDING SITE FOR RESIDUE FMT A2014
5AC5SOFTWAREALA A:866 , VAL A:997 , PHE A:998 , ALA A:999BINDING SITE FOR RESIDUE FMT A2015
6AC6SOFTWARELYS A:747BINDING SITE FOR RESIDUE FMT A2016
7AC7SOFTWARETHR A:754 , PHE A:924 , HOH A:3009BINDING SITE FOR RESIDUE FMT A2017

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AMN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AMN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AMN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AMN)

(-) Exons   (0, 0)

(no "Exon" information available for 5AMN)

(-) Sequences/Alignments

Asymmetric Unit
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhh.eeeeeeeee...eeeeeeeee.......eeeeeeeee....hhhhhhhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eeee...eeee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5amn A  700 GPLSLSVDAFKIDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVyEEDSyVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 1010
                                   709 ||    721       731       741       751       761       771       781       791       801       811       821||     851       861       871       881       891       901   |   911       921       931       941       951       961       971       981       991      1001         
                                     711|                                                                                                         822|                                                      900-PTR|                                                                                                         
                                      714                                                                                                          843                                                           905-PTR                                                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AMN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AMN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AMN)

(-) Gene Ontology  (64, 64)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RET_HUMAN | P079491xpd 2ivs 2ivt 2ivu 2ivv 2x2k 2x2l 2x2m 2x2u 4cki 4ckj 4ux8 5fm2 5fm3

(-) Related Entries Specified in the PDB File

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