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(-) Description

Title :  ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 2
 
Authors :  R. Spurny, S. Debaveye, A. Farinha, K. Veys, T. Gossas, J. Atack, D. Bert J. Kemp, A. Vos, U. H. Danielson, G. Tresadern, C. Ulens
Date :  22 Jan 15  (Deposition) - 06 May 15  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Transport Protein, Pentameric Ligand-Gated Ion Channels, Cys-Loop Receptor, Nicotinic Acetylcholine Receptor, Allosteric Modulation, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Spurny, S. Debaveye, A. Farinha, K. Veys, A. M. Vos, T. Gossas, J. Atack, S. Bertrand, D. Bertrand, U. H. Danielson, G. Tresadern, C. Ulens
Molecular Blueprint Of Allosteric Binding Sites In A Homologue Of The Agonist-Binding Domain Of The Alpha7 Nicotinic Acetylcholine Receptor.
Proc. Natl. Acad. Sci. Usa V. 112 E2543 2015
PubMed-ID: 25918415  |  Reference-DOI: 10.1073/PNAS.1418289112

(-) Compounds

Molecule 1 - ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-7
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Organism Common: HUMAN, GREAT POND SNAIL
    Organism Scientific: HOMO SAPIENS, LYMNAEA STAGNALIS
    Organism Taxid: 9606, 6523
    Synonym: ALPHA7-ACHBP, ACH-BINDING PROTEIN, ACHBP

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 28)

Asymmetric/Biological Unit (6, 28)
No.NameCountTypeFull Name
15VU6Ligand/IonN-(2,4-DIFLUOROPHENYL)PYRROLIDINE-1-CARBOXAMIDE
2BMA1Ligand/IonBETA-D-MANNOSE
3GOL5Ligand/IonGLYCEROL
4L0B5Ligand/IonALPHA-LOBELINE
5MAN1Ligand/IonALPHA-D-MANNOSE
6NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:91 , TRP A:145 , CYS A:186 , TYR A:191 , HOH A:2050 , TRP B:53 , GLN B:114 , LEU B:116BINDING SITE FOR RESIDUE L0B A 1205
02AC2SOFTWARELEU A:88 , GLN A:121 , PHE A:142BINDING SITE FOR RESIDUE GOL A 1206
03AC3SOFTWAREGLN A:3 , LEU A:6 , TYR A:7 , LEU A:10 , VAL A:11 , VAL A:76 , SER A:77 , VAL A:78 , SER A:82 , HOH A:2047 , ASP E:17 , VAL E:18 , 5VU E:1207BINDING SITE FOR RESIDUE 5VU A 1207
04AC4SOFTWARETYR B:91 , TRP B:145 , CYS B:186 , CYS B:187 , TYR B:191 , TRP C:53 , GLN C:55 , GLN C:114 , LEU C:116 , HOH C:2016 , HOH C:2029BINDING SITE FOR RESIDUE L0B B 1205
05AC5SOFTWAREMET B:56 , LEU B:88 , PRO B:97 , ILE B:119 , GLN B:121 , HOH B:2067BINDING SITE FOR RESIDUE GOL B 1206
06AC6SOFTWAREASP A:17 , VAL A:18 , HOH A:2010 , GLN B:3 , LEU B:6 , TYR B:7 , VAL B:11 , LEU B:63 , VAL B:76 , SER B:77 , SER B:82BINDING SITE FOR RESIDUE 5VU B 1207
07AC7SOFTWARETYR C:91 , TRP C:145 , TYR C:184 , CYS C:186 , TRP D:53 , GLN D:55 , GLN D:114 , LEU D:116BINDING SITE FOR RESIDUE L0B C 1205
08AC8SOFTWARELEU C:88 , GLN C:121BINDING SITE FOR RESIDUE GOL C 1206
09AC9SOFTWAREASN B:45 , GLN C:37 , ILE C:38 , TYR C:164 , ILE C:165 , SER C:168 , ARG C:169 , PHE C:170BINDING SITE FOR RESIDUE GOL C 1207
10BC1SOFTWAREASP B:17 , VAL B:18 , HOH B:2012 , GLN C:3 , LEU C:6 , TYR C:7 , VAL C:76 , SER C:77 , VAL C:78 , SER C:82 , HOH C:2001BINDING SITE FOR RESIDUE 5VU C 1208
11BC2SOFTWARETYR D:91 , TRP D:145 , CYS D:186 , TYR D:191 , TRP E:53 , GLN E:55 , GLN E:114BINDING SITE FOR RESIDUE L0B D 1205
12BC3SOFTWAREASP C:17 , HOH C:2008 , GLN D:3 , LEU D:6 , TYR D:7 , VAL D:11 , VAL D:76 , SER D:77 , VAL D:78 , SER D:82BINDING SITE FOR RESIDUE 5VU D 1206
13BC4SOFTWARETRP A:53 , GLN A:114 , LEU A:116 , TYR E:91 , SER E:144 , TRP E:145 , CYS E:186 , CYS E:187 , TYR E:191 , HOH E:2071BINDING SITE FOR RESIDUE L0B E 1205
14BC5SOFTWARELEU E:88 , PRO E:97 , ILE E:119 , GLN E:121 , HOH E:2076BINDING SITE FOR RESIDUE GOL E 1206
15BC6SOFTWAREGLN A:3 , GLN A:75 , VAL A:76 , SER A:77 , LEU A:104 , 5VU A:1207 , ASP E:17 , VAL E:18 , ILE E:19 , TRP E:84 , VAL E:85 , ASP E:87 , HIS E:147BINDING SITE FOR RESIDUE 5VU E 1207
16BC7SOFTWAREASP D:17 , HOH D:2010 , GLN E:3 , LEU E:6 , TYR E:7 , LEU E:10 , VAL E:76 , SER E:77 , VAL E:78 , SER E:82BINDING SITE FOR RESIDUE 5VU E 1208
17BC8SOFTWAREASN A:108 , SER A:109 , SER A:110 , HIS A:112 , HOH A:2087 , HOH A:2088 , HOH A:2089 , SER D:149 , ASP D:153 , GLN D:155 , ARG D:179 , GLU D:181Binding site for Poly-Saccharide residues NAG A 301 through MAN A 304 bound to ASN A 108
18BC9SOFTWAREASN B:108 , SER B:109 , SER B:110 , HIS B:112 , HOH B:2066Binding site for Poly-Saccharide residues NAG B 301 through NAG B 302 bound to ASN B 108
19CC1SOFTWARETYR C:30 , ASN C:108 , SER C:109 , SER C:110 , HIS C:112Binding site for Poly-Saccharide residues NAG C 301 through NAG C 302 bound to ASN C 108
20CC2SOFTWAREASN D:108 , SER D:109 , SER D:110 , HIS D:112 , HOH D:2056Binding site for Poly-Saccharide residues NAG D 301 through NAG D 302 bound to ASN D 108
21CC3SOFTWAREASN E:108 , SER E:109 , SER E:110 , HIS E:112Binding site for Poly-Saccharide residues NAG E 301 through NAG E 302 bound to ASN E 108

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:125 -A:138
2A:186 -A:187
3B:125 -B:138
4B:186 -B:187
5C:125 -C:138
6C:186 -C:187
7D:125 -D:138
8D:186 -D:187
9E:125 -E:138
10E:186 -E:187

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AFK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AFK)

(-) Exons   (0, 0)

(no "Exon" information available for 5AFK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhh....eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afk A   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afk B   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain C from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afk C   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain D from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhh....eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afk D   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     


Chain E from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee......hhhhh....eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee..hhhhhh...eeeeeeeee.......eeeee.............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afk E   0 GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AFK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AFK)

(-) Gene Ontology  (35, 43)

Asymmetric/Biological Unit(hide GO term definitions)

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  ACHP_LYMST | P58154
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACHA7_HUMAN | P36544: 2maw 5afh 5afj 5afl 5afm 5afn
        ACHP_LYMST | P58154: 1i9b 1uv6 1uw6 1ux2 1yi5 2zju 2zjv 3u8j 3u8k 3u8l 3u8m 3u8n 3wip 3wth 3wti 3wtj 3wtk 3wtl 3wtm 3wtn 3wto 3zdg 3zdh 4alx 4hqp 4nzb 4qaa 4qab 4qac 4um1 4um3 4zjt 4zk1 4zr6 4zru 5afh 5afj 5afl 5afm 5afn 5bp0 5j5f 5j5g 5j5h 5j5i 5t90

(-) Related Entries Specified in the PDB File

5afh ALPHA7-ACHBP IN COMPLEX WITH LOBELINE
5afj ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 1
5afl ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 3
5afm ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 4
5afn ALPHA7-ACHBP IN COMPLEX WITH LOBELINE AND FRAGMENT 5