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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HETERODIMERIC HIF-2A:ARNT COMPLEX WITH HRE DNA
 
Authors :  D. Wu, N. Potluri, J. Lu, Y. Kim, F. Rastinejad
Date :  08 May 15  (Deposition) - 12 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Arnt, Hif-2A, Hre, Bhlh-Pas, Protein Transport-Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Wu, N. Potluri, J. Lu, Y. Kim, F. Rastinejad
Structural Integration In Hypoxia-Inducible Factors.
Nature V. 524 303 2015
PubMed-ID: 26245371  |  Reference-DOI: 10.1038/NATURE14883

(-) Compounds

Molecule 1 - ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPMKH
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 82-464
    GeneARNT
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, HYPOXIA-INDUCIBLE FACTOR 1-BETA, HIF1-BETA
 
Molecule 2 - ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPSJ2
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 3-361
    GeneEPAS1, HIF2A
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymEPAS-1, HIF-1-ALPHA-LIKE FACTOR, MHLF, HIF-RELATED FACTOR, HRF, HYPOXIA-INDUCIBLE FACTOR 2-ALPHA, HIF2-ALPHA
 
Molecule 3 - DNA (5'- D(*GP*GP*CP*TP*GP*CP*GP*TP*AP*CP*GP*TP*GP*CP*GP*GP*GP*TP*CP*GP*T)- 3')
    ChainsC
    EngineeredYES
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    Other DetailsHRE DNA SENSE STRAND
    SyntheticYES
 
Molecule 4 - DNA (5'- D(*CP*AP*CP*GP*AP*CP*CP*CP*GP*CP*AP*CP*GP*TP*AP*CP*GP*CP*AP*GP*C)- 3')
    ChainsD
    EngineeredYES
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    Other DetailsHRE DNA ANTISENSE STRAND
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZPK)

(-) Sites  (0, 0)

(no "Site" information available for 4ZPK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZPK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZPK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZPK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZPK)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZPK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhh...eeeeeee.....eeee..hhhhhhh.hhhhhhhhhhhhh...hhhhhhhhh....eeeeeeee.......eeeeeeeee..eeeeeeee...eeeeee.....eeee..hhhhhhh.hhhhh....hhhhh...hhhhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeeeee......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zpk A  87 ERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSRRSFICRMRCGTPHFVVVHCTGYIKFCLVAIGRLQVTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTREWLWMRTSSFTFQNPYSDEIEYIICTNTNV 464
                                    96       106       116       126       136     ||160       170       180       190       200       210       220      |261       271|      310  ||   341   ||  366       376       386       396       406       416       426       436       446       456        
                                                                                 142|                                                                   227|         271|         313|       345|                                                                                                       
                                                                                  157                                                                    259          301          335        361                                                                                                       

Chain B from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh..eeeee.....eeee...hhhhhh.hhhhhh..hhhhhh...hhhhhhhhh.....eeeeeeeee.........hhhhheeeeeeeeeeeee...eeeeeeeee..............eeeeee.....eeee..hhhhhhh.hhhhh...hhhhh.hhhhhhhhhhhhhhhhhh.eee...eeee.....eeeeeeeeeee......eeeeeeee................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zpk B   8 KRSSSELRKEKSRDAARCRRSKETEVFYELAHELPLPHSVSSHLDKASIMRLAISFLRTHKLLSSVCSENESEAEADQQMDNLYLKALEGFIAVVTQDGDMIFLSENISKFMGLTQVELTGHSIFDFTHPCDHEEIRENLTLSTERDFFMRMKCTVTNRGRTVNLKSATWKVLHCTGQVRVYNLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNLQPQCIMCVNYVLSEIKNDVVFSMDQTE 360
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147 ||    170       180       190       200  ||   225       235       245       255       265       275       285       295       305       315       325  ||   338       349       359 
                                                                                                                                                                       149|                                     203|                                                                                                          328|            347|           
                                                                                                                                                                        163                                      219                                                                                                           332             349           

Chain C from PDB  Type:DNA  Length:21
                                                     
                 4zpk C   1 GGCTGCGTACGTGCGGGTCGT  21
                                    10        20 

Chain D from PDB  Type:DNA  Length:21
                                                     
                 4zpk D   1 CACGACCCGCACGTACGCAGC  21
                                    10        20 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZPK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZPK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZPK)

(-) Gene Ontology  (50, 67)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARNT_MOUSE | P537624zp4 4zph 4zpr 4zqd 5sy5 5sy7
        EPAS1_MOUSE | P974814zp4 4zph 4zqd

(-) Related Entries Specified in the PDB File

4zp4 4zph 4zpr