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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HETERODIMERIC HIF-2A:ARNT COMPLEX
 
Authors :  D. Wu, N. Potluri, J. Lu, Y. Kim, F. Rastinejad
Date :  07 May 15  (Deposition) - 12 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Arnt, Hif-2A Complex, Bhlh-Pas, Protein Transport-Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Wu, N. Potluri, J. Lu, Y. Kim, F. Rastinejad
Structural Integration In Hypoxia-Inducible Factors.
Nature V. 524 303 2015
PubMed-ID: 26245371  |  Reference-DOI: 10.1038/NATURE14883

(-) Compounds

Molecule 1 - ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPMKH
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 82-464
    GeneARNT
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, HYPOXIA-INDUCIBLE FACTOR 1-BETA, HIF1-BETA
 
Molecule 2 - ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPSJ2
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 3-361
    GeneEPAS1, HIF2A
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymEPAS-1, HIF-1-ALPHA-LIKE FACTOR, MHLF, HIF-RELATED FACTOR, HRF, HYPOXIA-INDUCIBLE FACTOR 2-ALPHA, HIF2-ALPHA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZP4)

(-) Sites  (0, 0)

(no "Site" information available for 4ZP4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZP4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZP4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZP4)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZP4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhheeeeeee.....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeeeeee....eeeeeee......eeeeee.....eeee..hhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeeeeee......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zp4 A  98 ERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSSRRSFICRMRCGTPHFVVVHCTGYIKAWKFCLVAIGRLQVTPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTREWLWMRTSSFTFQNPYSDEIEYIICTNTNV 464
                                   107       117       127       137    || 163       173       183       193       203       213       223    || 263       302       312  ||   340     ||363       373       383       393       403       413       423       433       443       453       463 
                                                                      142|                                                                  228|         271|           315|         346|                                                                                                        
                                                                       159                                                                   259          301            334          360                                                                                                        

Chain B from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..eeeeee....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeeeeeee.........hhhhheeeeeeeeeeee...eeeeeeee..............eeeeee.....eeee.hhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhheee...eeee.....eeeeeeeeeeee......eeeeeeeeee...........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zp4 B  26 RRSKETEVFYELAHELPLPHSVSSHLDKASIMRLAISFLRTHKLLSSVCSMDNLYLKALEGFIAVVTQDGDMIFLSENISKFMGLTQVELTGHSIFDFTHPCDHEEIRENLTLVSTERDFFMRMKCTVTNRGRTVNLKSATWKVLHCTGQVRVLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMDQTE 360
                                    35        45        55        65        75|       96       106       116       126       136       146  ||   168       178       188       198  ||   225       235       245       255       265       275       285       295       305       315       325       335       345       355     
                                                                            75|                                                           149|                                    201|                                                                                                                                             
                                                                             87                                                            162                                     219                                                                                                                                             

Chain C from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhheeeeeee.....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee....eeeeeee......eeeeee.....eeee..hhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeeeee......eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zp4 C  98 ERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSSRRSFICRMRCGPHFVVVHCTGYIKAWKFCLVAIGRLQVTSTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTREWLWMRTSSFTFQNPYSDEIEYIICTNTNV 464
                                   107       117       127       137    || 165       175       185       195       205       215       225  ||   265    || 305       315|      343   ||  366       376       386       396       406       416       426       436       446       456        
                                                                      142|                                                                228|        270|           315|          347|                                                                                                       
                                                                       161                                                                 259         301            334           361                                                                                                       

Chain D from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..eeeeee....eeee..hhhhhhh.hhhhhh..hhhhhh...hhhhhhhhhh....eeeeeeeeee....hhhhheeeeeeeeeeee....eeeeeeee..............eeeeee.....eeee.hhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhheee...eeee.....eeeeeeeeeeee......eeeeeeeeee...........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zp4 D  26 RRSKETEVFYELAHELPLPHSVSSHLDKASIMRLAISFLRTHKLLSSVDNLYLKALEGFIAVVTQDGDMIFLSENISKFMGLTQVELTGHSIFDFTHPCDHEEIRENLTLVSTERDFFMRMKCTVTVNLKSATWKVLHCTGQVRVYLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMDQTE 360
                                    35        45        55        65       |89        99       109       119       129       139       149|      171    || 186       196     ||222       232       242       252       262       272       282       292       302       312       322       332       342       352        
                                                                          73|                                                          149|           176|                 202|                                                                                                                                             
                                                                           88                                                           162            182                  219                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZP4)

(-) Gene Ontology  (50, 67)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARNT_MOUSE | P537624zph 4zpk 4zpr 4zqd 5sy5 5sy7
        EPAS1_MOUSE | P974814zph 4zpk 4zqd

(-) Related Entries Specified in the PDB File

4zph 4zpk 4zpr