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(-) Description

Title :  THE PLANT PEPTIDE HORMONE RECEPTOR COMPLEX IN ARABIDOPSIS
 
Authors :  J. Chai, J. Wang, Z. Han
Date :  03 Apr 15  (Deposition) - 02 Mar 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.66
Chains :  Asym. Unit :  A,C,P
Biol. Unit 1:  A,C,P  (1x)
Biol. Unit 2:  A,P  (1x)
Keywords :  Hormone Receptor Complex, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wang, H. Li, Z. Han, H. Zhang, T. Wang, G. Lin, J. Chang, W. Yang, J. Cha
Allosteric Receptor Activation By The Plant Peptide Hormone Phytosulfokine
Nature V. 525 265 2015
PubMed-ID: 26308901  |  Reference-DOI: 10.1038/NATURE14858

(-) Compounds

Molecule 1 - PHYTOSULFOKINE RECEPTOR 1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Taxid: 266783
    Fragment: UNP RESIDES 24-648
    Gene: PSKR1, PSKR, AT2G02220, F5O4.1
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATPSKR1,PHYTOSULFOKINE LRR RECEPTOR KINASE 1
 
Molecule 2 - SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1
    Chains: C
    EC Number: 2.7.10.1, 2.7.11.1
    Engineered: YES
    Expression System: INSECT BA PHYTOPLASMA
    Expression System Taxid: 1286942
    Fragment: UNP RESIDUES 1-213
    Gene: SERK1
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATSERK1,SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1
 
Molecule 3 - PHYTOSULFOKINE
    Chains: P
    Engineered: YES
    Organism Scientific: ARABIDOPSIS
    Organism Taxid: 3701
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ACP
Biological Unit 1 (1x): ACP
Biological Unit 2 (1x): A P

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO44Ligand/IonSULFATE ION
3TYS2Mod. Amino AcidO-SULFO-L-TYROSINE
Biological Unit 1 (3, 17)
No.NameCountTypeFull Name
1NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO44Ligand/IonSULFATE ION
3TYS2Mod. Amino AcidO-SULFO-L-TYROSINE
Biological Unit 2 (3, 15)
No.NameCountTypeFull Name
1NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO43Ligand/IonSULFATE ION
3TYS2Mod. Amino AcidO-SULFO-L-TYROSINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:327 , ARG A:349 , NAG A:706binding site for residue SO4 A 711
02AC2SOFTWARETRP A:253 , GLN A:276 , ARG A:300binding site for residue SO4 A 712
03AC3SOFTWAREPRO A:621 , ASN A:622 , NAG A:710binding site for residue SO4 A 713
04AC4SOFTWAREALA C:196 , ASN C:197binding site for residue SO4 C 1502
05AC5SOFTWAREASN A:106 , SER A:108 , ASP A:130binding site for Mono-Saccharide NAG A 701 bound to ASN A 106
06AC6SOFTWARETHR A:142 , SER A:143 , ILE A:144 , ASN A:145 , HIS A:166 , HIS A:169 , ASN A:170binding site for Mono-Saccharide NAG A 702 bound to ASN A 170
07AC7SOFTWARETRP A:253 , THR A:277 , ARG A:300 , ASN A:301 , GLN P:32binding site for Poly-Saccharide residues NAG A 703 through NAG A 704 bound to ASN A 301
08AC8SOFTWARELYS A:286 , ASN A:290 , ASN A:311binding site for Mono-Saccharide NAG A 705 bound to ASN A 311
09AC9SOFTWAREARG A:349 , ASN A:373 , SO4 A:711 , TYS P:28 , TYS P:30binding site for Mono-Saccharide NAG A 706 bound to ASN A 373
10AD1SOFTWAREGLN A:355 , ASN A:378 , SER A:381binding site for Mono-Saccharide NAG A 707 bound to ASN A 378
11AD2SOFTWAREASN A:424 , ARG A:426 , TRP A:448 , ASN A:472 , HIS A:532binding site for Mono-Saccharide NAG A 708 bound to ASN A 472
12AD3SOFTWAREASN A:533 , ASN A:534binding site for Mono-Saccharide NAG A 709 bound to ASN A 534
13AD4SOFTWAREASN A:622 , HIS A:634 , SO4 A:713binding site for Mono-Saccharide NAG A 710 bound to ASN A 622
14AD5SOFTWARELEU C:126 , ASN C:150 , ASN C:174 , ASN C:197binding site for Mono-Saccharide NAG C 1501 bound to ASN C 150

(-) SS Bonds  (7, 7)

Asymmetric Unit
No.Residues
1A:31 -A:62
2A:63 -A:70
3A:168 -A:195
4A:312 -A:339
5A:631 -A:638
6C:58 -C:65
7C:202 -C:210

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:47 -Pro A:48
2Asp A:51 -Gly A:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z64)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z64)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z64)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:605
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhee.......hhhhh.hhhhh..ee.....eee......eee.hhhhhhh....eee....eee...hhhhhhh....eee....................eee......ee..hhhhhh......eee....eeeee...hhhhh....eee....eee...hhhhhhh....eee......ee..hhhhhhh....eee....eeeee...hhhhh....eee....eeee.............eee....eeeee............eee....eeee....hhhhh....eee....ee.ee.hhhhhhh....eee.....eehhhhhhhhhh......eee......................eee......eee.hhhhhhh....eee....eee...hhhhhhh....eee..........hhhhhhhhhhhh.............eee........eee.hhhhh..eee..........hhhhhhh....eee..........hhhhhhh....eee......ee..hhhhhhh....eee....eeeee.....hhhhhhhhhh...eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z64 A  30 RCHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQTLDLSSNDLSGGIPTSINLPALQSFDLSSNKFNGSLPSHICHNSTQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKSLANSPSLNLLNLRNNSLSGRLMLNCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARNTFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALPDDSSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLTKLESLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNHLCGEHRFPCS 639
                                    39        49        59        69 ||     84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634     
                                                                    71|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                                                                     77                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh......................eee.....eeeee......eee.hhhhhhh....eee....eeee..hhhhhhh....eee....eeee..hhhhhhh....eee....eeee....hhhhh....eee....eeeee...hhhhhhhhhhhh....eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z64 C  26 ANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGDLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTQITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCP 211
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      


Chain P from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author .ee.. Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4z64 P  28 yIyTQ  32
                            | |  
                           28-TYS
                             30-TYS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z64)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z64)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z64)

(-) Gene Ontology  (36, 48)

Asymmetric Unit(hide GO term definitions)

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  4z64
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PSKR1_ARATH | Q9ZVR7: 4z63
        PSK_DAUCA | P58261: 4z5w 4z61 4z63
        SERK1_ARATH | Q94AG2: 4lsc 4lsx 5iyx

(-) Related Entries Specified in the PDB File

4z5w 4z61 4z62 4z63