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(-) Description

Title :  L4B DOMAIN OF HUMAN LAMININ ALPHA-2
 
Authors :  M. Toot, Y. Gat, D. Fass
Date :  24 Feb 15  (Deposition) - 27 May 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  U
Keywords :  Carbohydrate Binding Fold, Laminin, Extracellular Matrix, Ephrin Receptor, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Moran, Y. Gat, D. Fass
Laminin L4 Domain Structure Resembles Adhesion Modules In Ephrin Receptor And Other Transmembrane Glycoproteins.
Febs J. V. 282 2746 2015
PubMed-ID: 25962468  |  Reference-DOI: 10.1111/FEBS.13319

(-) Compounds

Molecule 1 - LAMININ SUBUNIT ALPHA-2
    Chains: U
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMAL-C2
    Expression System Taxid: 469008
    Fragment: L4B DOMAIN, UNP RESIDUES 1177-1379
    Gene: LAMA2, LAMM
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LAMININ M CHAIN,LAMININ-12 SUBUNIT ALPHA,LAMININ-2 SUBUNIT ALPHA,LAMININ-4 SUBUNIT ALPHA,MEROSIN HEAVY CHAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : U

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YEQ)

(-) Sites  (0, 0)

(no "Site" information available for 4YEQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YEQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His U:39 -Pro U:40
2Glu U:56 -Pro U:57

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YEQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YEQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4YEQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain U from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.........ee......ee...eeee..eeeee.hhhhhhhhhh..eee.hhhhh..hhhhhhh.eeeeeeeeeee......eeeee......eeeee..........eeeee.......ee...........hhhhhhhhhh.eeeeeee....eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yeq U   5 GLIRTWVTLKAEQTILPLVDEALQHTTTKGIVFQHPEIVAHMDLMREDLHLEPFYWKLPEQFEGKKLMAYGGKLKYAIYFEAREETYNPQVIIRGGTPTHARIIVRHMAAPLIGQLTRHEIEMTEKEWKYYGDDPRVHRTVTREDFLDILYDIHYILIKATYGNFMRQSRISEISMEVAEQ 189
                                    14        24        34        44        54        64        74        84     || 98       108       118       128       138       148       158       168       178       188 
                                                                                                                90|                                                                                              
                                                                                                                 95
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YEQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YEQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YEQ)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu U:56 - Pro U:57   [ RasMol ]  
    His U:39 - Pro U:40   [ RasMol ]  
 

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  4yeq
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  LAMA2_HUMAN | P24043
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LAMA2_HUMAN | P24043: 4yep

(-) Related Entries Specified in the PDB File

4yep 4YEP CORRESPONDS TO THE SAME L4B DOMAIN LACKING SOME TERMINAL AMINO ACIDS PRESENT IN THIS ENTRY.