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(-) Description

Title :  STRUCTURE OF TOBACCO STREAK VIRUS COAT PROTEIN AT 2.1 ANGSTROMS RESOLUTION (C2 CRYSTAL FORM)
 
Authors :  A. Gulati, M. R. N. Murthy
Date :  13 Feb 15  (Deposition) - 20 Jan 16  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Biol. Unit 3:  C  (2x)
Keywords :  Domain-Swapped Dimer, Jelly Roll Beta-Barrel, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gulati, K. Alapati, A. Murthy, H. S. Savithri, M. R. N. Murthy
Structural Studies On Tobacco Streak Virus Coat Protein: Insights Into The Pleomorphic Nature Of Ilarviruses
J. Struct. Biol. V. 193 95 2016
PubMed-ID: 26706030  |  Reference-DOI: 10.1016/J.JSB.2015.12.007

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 73-238
    Organism Scientific: TOBACCO STREAK VIRUS
    Organism Taxid: 12317

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (2x):  B 
Biological Unit 3 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Y6X)

(-) Sites  (0, 0)

(no "Site" information available for 4Y6X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y6X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Y6X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y6X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y6X)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y6X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee.............eeeehhhhhh.........eeeeeeeeeee...eeeeee............eee.....eeeeeeeeeeehhhhh..eeeeee.........eee..eeeeee.......hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y6x A  90 SLKLPNNQVWVTRKASEWSAKTIDTNDAIPFKTIVEGIPEINSETKFYRLLIGFVAVSDGTFGMVDGVIPDPPVVGRLGFKKNTYRSRDFDLGGKLLNQLDDRAIVWCLDERRRDAKRVQLAGYWIAISKPAPLMPPEDFLVNQ 237
                                    99       109       119       129       139       149       163       173       183       193       203       213       223       233    
                                                                                             157|                                                                           
                                                                                              162                                                                           


Chain B from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee............eeeehhhhhh.........eeeeeeeeeee...eeeeee.............eee.....eeeeeeeeeeehhhhh..eeeeee.........eee..eeeeee................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y6x B  90 SLKLPNNQVWVTRKASEWSAKTITNDAIPFKTIVEGIPEINSETKFYRLLIGFVAVSDGTFGMVDGVVIPDPPVVGRLGFKKNTYRSRDFDLGGKLLNQLDDRAIVWCLDERRRDAKRVQLAGYWIAISKPAPLMPPEDFLVNQD 238
                                    99       109  ||   120       130       140       150      |163       173       183       193       203       213       223       233     
                                                112|                                        157|                                                                             
                                                 114                                         161                                                                             


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeee.............eeeehhhhhh.........eeeeeeeeeee...eeeeee.............eee.....eeeeeeeeeeehhhhh..eeeeee.........eee..eeeeee.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y6x C  90 SLKLPNNQVWVTRKASEWSAKTIDTNDAIPFKTIVEGIPEINSETKFYRLLIGFVAVSDGTFGMVDGDVIPDPPVVGRLGFKKNTYRSRDFDLGGKLLNQLDDRAIVWCLDERRRDAKRVQLAGYWIAISKPAPLMPPEDFLVN 236
                                    99       109       119       129       139       149      |162       172       182       192       202       212       222       232    
                                                                                            156|                                                                            
                                                                                             160
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y6X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y6X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y6X)

(-) Gene Ontology  (4, 4)

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 Related Entries

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        A7UMQ4_9BROM | A7UMQ4: 4y6t

(-) Related Entries Specified in the PDB File

4y6t