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(-) Description

Title :  STRUCTURE OF SOX18-HMG/PROX1-DNA
 
Authors :  K. Narasimhan, N. Prokoph, P. Kolatkar, H. Robinson, R. Jauch
Date :  12 Feb 15  (Deposition) - 02 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transcription Factor, Sox, Protein-Dna, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Klaus, N. Prokoph, M. Girbig, X. Wang, Y. H. Huang, Y. Srivastava, L. Hou, K. Narasimhan, P. R. Kolatkar, M. Francois, R. Jauch
Structure And Decoy-Mediated Inhibition Of The Sox18/Prox1-Dna Interaction.
Nucleic Acids Res. 2016
PubMed-ID: 26939885  |  Reference-DOI: 10.1093/NAR/GKW130

(-) Compounds

Molecule 1 - TRANSCRIPTION FACTOR SOX-18
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 77-155
    Gene: SOX18, SOX-18
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - DNA (5'- D(*CP*AP*CP*TP*AP*GP*CP*AP*TP*TP*GP*TP*CP*TP*GP*GP*G)-3')
    Chains: A
    Engineered: YES
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(*GP*CP*CP*CP*AP*GP*AP*CP*AP*AP*TP*GP*CP*TP*AP*GP*T)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Y60)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:17
                                                
                  4y60 A  0 CACTAGCATTGTCTGGG 16
                                     9       


Chain B from PDB  Type:DNA  Length:17
                                                
                  4y60 B  0 GCCCAGACAATGCTAGT 16
                                     9       


Chain C from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4y60 C  0 GLRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDHPNYKYRPR 75
                                     9        19        29        39        49        59        69
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (38, 38)

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  4y60
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 Related Entries

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