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(-) Description

Title :  CRYSTAL STRUCTURE OF PAXX
 
Authors :  M. Xing, M. Yang, W. Huo, F. Feng, L. Wei, S. Ning, Z. Yan, W. Li, Q. Wang, M. C. Dong, R. Guo, G. Gao, J. Ji, L. Lan, H. Liang, D. Xu
Date :  29 Sep 14  (Deposition) - 11 Mar 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Repair, Dsb, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Xing, M. Yang, W. Huo, F. Feng, L. Wei, W. Jiang, S. Ning, Z. Yan, W. Li, Q. Wang, M. Hou, C. Dong, R. Guo, G. Gao, J. Ji, S. Zha, L. Lan, H. Liang, D. Xu
Interactome Analysis Identifies A New Paralogue Of Xrcc4 In Non-Homologous End Joining Dna Repair Pathway.
Nat Commun V. 6 6233 2015
PubMed-ID: 25670504  |  Reference-DOI: 10.1038/NCOMMS7233

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN C9ORF142
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Fragment: UNP RESIDUES 1-145
    Gene: C9ORF142
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: XLF2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WJA)

(-) Sites  (0, 0)

(no "Site" information available for 4WJA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WJA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:11 -Pro A:12
2Glu A:25 -Gly A:26
3Leu B:11 -Pro B:12
4Glu B:25 -Gly B:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WJA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WJA)

(-) Exons   (0, 0)

(no "Exon" information available for 4WJA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.......eeeeee....eeeee....eee...hhhhhhhhhhhh......hhhhhhhhhhh..eeeeee..eeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wja A   5 SPPLCTLPPPEPPRFVCYCEGEGFNLYVTDAAELWSTCFTPDSLAALKARFGLSAADITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVWSLERRLAAA 142
                                    15        25 ||     43        53        63     || 74        84        94       104       114       124       134        
                                   13|          27|                               69|                                                                       
                                    15           36                                71                                                                       


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeeeee........eeeee....eee...hhhhhhhhhhhh......hhhhhhhhhhh..eeee....eeee......eeee.ee.hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wja B   5 SPPLCTLPPGPEPPRFVCYCEGEEDRGGFNLYVTDAAELWSTCFTPDSLAALKARFGLSAADITPRFRAACEQQAVALTLQEASLTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVWSLERRLAA 141
                                    14        24   ||   38        48        58        68||      79        89 ||    101       111       121       131       141
                                                  28|                                  69|                  91|                                               
                                                   33                                   71                   94
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WJA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WJA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WJA)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4wja)
 
  Sites
(no "Sites" information available for 4wja)
 
  Cis Peptide Bonds
    Glu A:25 - Gly A:26   [ RasMol ]  
    Glu B:25 - Gly B:26   [ RasMol ]  
    Leu A:11 - Pro A:12   [ RasMol ]  
    Leu B:11 - Pro B:12   [ RasMol ]  
 

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  4wja
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  PAXX_HUMAN | Q9BUH6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAXX_HUMAN | Q9BUH6: 3wtd 3wtf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WJA)