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(-) Description

Title :  METHANOPYRUS KANDLERI FEN-1 NUCLEASE
 
Authors :  S. Shah, P. Dunten, N. C. Horton
Date :  28 Aug 14  (Deposition) - 12 Nov 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Dna Nuclease, Nucleotide Excision Repair, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shah, P. Dunten, A. Stiteler, C. K. Park, N. C. Horton
Structure And Specificity Of Fen-1 From Methanopyrus Kandleri.
Proteins V. 83 188 2015
PubMed-ID: 25354467  |  Reference-DOI: 10.1002/PROT.24704

(-) Compounds

Molecule 1 - FLAP ENDONUCLEASE 1
    Chains: A, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL_C4X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FEN, MK0566
    Organism Scientific: METHANOPYRUS KANDLERI
    Organism Taxid: 190192
    Strain: AV19 / DSM 6324 / JCM 9639 / NBRC 100938
    Synonym: FEN-1,FLAP STRUCTURE-SPECIFIC ENDONUCLEASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:63 , PHE A:316 , SER A:317binding site for residue CL A 401
2AC2SOFTWAREARG A:320 , HOH A:505 , HOH A:507 , HOH A:510binding site for residue CL A 402
3AC3SOFTWAREARG B:320 , HOH B:505 , HOH B:510binding site for residue CL B 401
4AC4SOFTWARETYR B:63 , PHE B:316 , SER B:317binding site for residue CL B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WA8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WA8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WA8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WA8)

(-) Exons   (0, 0)

(no "Exon" information available for 4WA8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.ee.hhhhhh..eeeeehhhhhhhhhhhhee..ee........hhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhh....eee...hhhhhh...eeee.....eeee......eeee..eeeehhhhhhhhh..hhhhhhhhhhhhh...........hhhhhhhhhhhhh.hhhhhhh.hhhhhhhhh..hhhhhhhhhhh..............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wa8 A   1 MGLAELRELIEPEETDLRALAGREIAIDAFNALYQFLTTIMKDGRPLMDSRGRITSHLNGLLYRTVNLVEEGIKPVYVFDGEPPDLKLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPEKLRRLFLEPEVTDDYELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGG 339
                                    10        20        30        40        50        60        70        80      |126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336   
                                                                                                                 87|                                                                                                                                                                                                                       
                                                                                                                 124                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.....ee.hhhhhh..eeeeehhhhhhhhhhhh............hhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhh....eee...hhhhhh...eeee.....ee...ee..eeeehhhhhhhhh..hhhhhhhhhhhhh...........hhhhhhhhhhhhh.hhhhh.hhhhhhhhh..hhhhhhhhhhh..............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wa8 B   1 MGLAELRELIEPEETDLRALAGREIAIDAFNALYQFLTTIMKRPLMDSRGRITSHLNGLLYRTVNLVEEGIKPVYVFDGEPPLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDIWPKIERHLPVEPEKLRRLFLEPEVTDDYELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGG 339
                                    10        20        30        40 ||     52        62        72        82 ||    131       141       151       161       171       181       191|      208       218       228       238       248       258   ||  270       280       290       300       310       320       330         
                                                                    42|                                     84|                                                                191|                                                            262|                                                                          
                                                                     45                                     124                                                                 199                                                             265
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WA8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WA8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WA8)

(-) Gene Ontology  (16, 16)

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