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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN C5A IN COMPLEX WITH MEDI7814 A NEUTRALISING ANTIBODY
 
Authors :  C. Colley, S. Sridharan, C. Dobson, B. Popovic, J. E. Debreczeni, D. Har B. Edwards, J. Brennan, L. England, S. Fung, L. An Eghobamien, U. Siva R. Woods, L. Flavell, G. J. Renshaw, K. Wickson, T. Wilkinson, R. Davie J. Bonnell, P. Warrener, R. Howes, T. Vaughan
Date :  25 Jul 14  (Deposition) - 12 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A,B,C,D,H,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,H,L  (1x)
Keywords :  Immune System, Fv, Complement System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Colley, S. Sridharan, C. Dobson, B. Popovic, J. E. Debreczeni, D. Hargreaves, B. Edwards, J. Brennan, L. England, S. Fung, L. An Eghobamien, U. Sivars, R. Woods, L. Flavell, G. J. Renshaw, K. Wickson, T. Wilkinson, R. Davies, J. Bonnell, P. Warrener, R. Howes T. Vaughan
Generation And Characterisation Of A Novel, High Affinity C5A Neutralising Antibody That Inhibits Binding To Both C5A Receptors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MEDI7814
    ChainsL, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentVARIABLE DOMAIN LIGHT CHAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMANISED ANTIBODY FRAGMENT
 
Molecule 2 - COMPLEMENT C5
    ChainsD, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentC5A
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMANISED ANTIBODY FRAGMENT
    SynonymC5A ANAPHYLATOXIN C5A, C3 AND PZP-LIKE ALPHA-2-MACROGLOBULIN DOMAIN-CONTAINING PROTEIN 4
 
Molecule 3 - MEDI7814
    ChainsH, A
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentVARIABLE DOMAIN HEAVY CHAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMANISED ANTIBODY FRAGMENT

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDHL
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:27 , ARG H:71 , ASP H:72 , ASN H:73 , SER H:74 , HOH H:2044 , HOH H:2085BINDING SITE FOR RESIDUE SO4 H1113
2AC2SOFTWARELYS L:66 , SER L:67 , GLY L:68BINDING SITE FOR RESIDUE SO4 L1108
3AC3SOFTWAREGLN L:37 , LYS L:45 , ILE L:47 , PHE L:62 , HOH L:2042BINDING SITE FOR RESIDUE SO4 L1109
4AC4SOFTWARETYR C:13 , LYS C:14 , HIS C:15 , VAL C:18 , ARG C:46 , HOH C:2012BINDING SITE FOR RESIDUE SO4 C1065

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:22 -A:92
2B:23 -B:88
3C:21 -C:47
4C:22 -C:54
5C:34 -C:55
6D:21 -D:47
7D:22 -D:54
8D:34 -D:55
9H:22 -H:92
10L:23 -L:88

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:100A-Pro A:100B
2Trp H:100A-Pro H:100B

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UU9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UU9)

(-) Exons   (0, 0)

(no "Exon" information available for 4UU9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee..hhhhh.......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                4uu9 A    1 EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDDDYEEWPWYYGMDVWGQGTMVTVS  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|      109   
                                                                              52A                            82A||               100A||||||            
                                                                                                              82B|                100B|||||            
                                                                                                               82C                 100C||||            
                                                                                                                                    100D|||            
                                                                                                                                     100E||            
                                                                                                                                      100F|            
                                                                                                                                       100G            

Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.....eeeeee.............eeee......ee...............eeeeee..eeeeee...hhhhheeeeeeeee...eeee...eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                4uu9 B    3 ALTQPASVSGSPGQSITISCTGTSSDIGGSKYVSWYQQHPGKAPKLIIFDVNRRPSGLSNRFSASKSGNTASLTISGLQAEDEADYYCTSYHPTKTILFGGGTKLTVLA  108
                                  ||13        23    ||| 30        40        50        60        70        80        90     |  99       | 
                                  9|              27A||                                                                  95A        107A 
                                  11               27B|                                                                                  
                                                    27C                                                                                  

Chain C from PDB  Type:PROTEIN  Length:65
                                                                                                  
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                4uu9 C    0 STLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRAN   64
                                     9        19        29        39        49        59     

Chain D from PDB  Type:PROTEIN  Length:66
                                                                                                   
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                4uu9 D    0 STLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANI   65
                                     9        19        29        39        49        59      

Chain H from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeee...hhhhheeeeeee..hhhhh.......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                4uu9 H    1 EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDDDYEEWPWYYGMDVWGQGTMVTVS  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F|      109   
                                                                              52A                            82A||               100A||||||            
                                                                                                              82B|                100B|||||            
                                                                                                               82C                 100C||||            
                                                                                                                                    100D|||            
                                                                                                                                     100E||            
                                                                                                                                      100F|            
                                                                                                                                       100G            

Chain L from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....eeeeee....hhhhh...eeeee......ee...............eeeeee..eeeeee...hhhhheeeeeeeee...eeee...eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                4uu9 L    1 QSALTQPASVSGSPGQSITISCTGTSSDIGGSKYVSWYQQHPGKAPKLIIFDVNRRPSGLSNRFSASKSGNTASLTISGLQAEDEADYYCTSYHPTKTILFGGGTKLTVL 107A
                                    11        21      ||28        38        48        58        68        78        88       |97      107A
                                    9|              27A||                                                                  95A        107A
                                    11               27B|                                                                                 
                                                      27C                                                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UU9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UU9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UU9)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO5_HUMAN | P010311cfa 1kjs 1xwe 3cu7 3hqa 3hqb 3kls 3km9 3prx 3pvm 4a5w 4e0s 4p39 5b4p 5b71 5hcc 5hcd 5hce 5i5k

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4UU9)