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(-) Description

Title :  CRYSTAL STRUCTURE OF MST3 WITH A PYRROLOPYRIMIDINE INHIBITOR (PF-06447475)
 
Authors :  J. Jasti, X. Song, M. Griffor, R. G. Kurumbail
Date :  05 Aug 14  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A
Keywords :  Mst3, Pyrrolopyrimidine, Inhibitor, Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. L. Henderson, B. L. Kormos, M. M. Hayward, K. J. Coffman, J. Jasti, R. G. Kurumbail, T. T. Wager, P. R. Verhoest, G. S. Noell, Y. Chen, E. Needle, Z. Berger, S. J. Steyn, C. Houle, W. D. Hirst, P. Galatsis
Discovery And Preclinical Profiling Of 3-[4-(Morpholin-4-Yl)-7H-Pyrrolo[2, 3-D]Pyrimidin-5-Yl]Benzonitrile (Pf-06447475), A Highly Potent, Selective, Brain Penetrant, And In Vivo Active Lrrk Kinase Inhibitor.
J. Med. Chem. V. 58 419 2015
PubMed-ID: 25353650  |  Reference-DOI: 10.1021/JM5014055

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE 24
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 9-298
    GeneSTK24, MST3, STK3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMAMMALIAN STE20-LIKE PROTEIN KINASE 3,MST-3,STE20-LIKE KINASE MST3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
13FE1Ligand/Ion3-[4-(MORPHOLIN-4-YL)-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL]BENZONITRILE
2MN1Ligand/IonMANGANESE (II) ION
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:162 , HOH A:639 , HOH A:640 , HOH A:641 , HOH A:642binding site for residue MN A 301
2AC2SOFTWAREILE A:30 , GLY A:31 , LYS A:32 , ALA A:51 , LYS A:53 , GLU A:70 , GLU A:100 , TYR A:101 , LEU A:102 , LEU A:151 , ALA A:161 , ASP A:162 , HOH A:541 , HOH A:575 , HOH A:644binding site for residue 3FE A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U8Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U8Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U8Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U8Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4U8Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhheeeeeeeeee..eeeeeeee.....eeeeeeee......hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u8z A   9 GLPGMQNLKADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNtFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELIDRYKRWKAEQ 298
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298
                                                                                                                                                                                                   178-TPO                                                                                                                    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U8Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U8Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U8Z)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STK24_HUMAN | Q9Y6E03a7f 3a7g 3a7h 3a7i 3a7j 3ckw 3ckx 3zhp 4o27 4qml 4qmm 4qmn 4qmo 4qmp 4qmq 4qms 4qmt 4qmu 4qmv 4qmw 4qmx 4qmy 4qmz 4qna 4qo9 4w8d 4w8e

(-) Related Entries Specified in the PDB File

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