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(-) Description

Title :  STRUCTURE OF THE COMPLEX OF VPS4B MIT AND IST1 MIM
 
Authors :  E. Z. Guo, Z. Xu
Date :  31 Jul 14  (Deposition) - 11 Feb 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Mim1 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Z. Guo, Z. Xu
Distinct Mechanisms Of Recognizing Endosomal Sorting Comple Required For Transport Iii (Escrt-Iii) Protein Ist1 By Different Microtubule Interacting And Trafficking (Mit) Domains.
J. Biol. Chem. V. 290 8396 2015
PubMed-ID: 25657007  |  Reference-DOI: 10.1074/JBC.M114.607903

(-) Compounds

Molecule 1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4B
    ChainsA
    EC Number3.6.4.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainROSETTA (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentMIT DOMAIN (UNP RESIDUES 1-89)
    GeneVPS4B, SKD1, VPS42, MIG1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCELL MIGRATION-INDUCING GENE 1 PROTEIN,SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1,PROTEIN SKD1
 
Molecule 2 - IST1 HOMOLOG
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainROSETTA (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 341-364
    GeneIST1, KIAA0174
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHIST1,PUTATIVE MAPK-ACTIVATING PROTEIN PM28

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U7Y)

(-) Sites  (0, 0)

(no "Site" information available for 4U7Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U7Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U7Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U7Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U7Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4U7Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4u7y A   1 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKA  83
                                    10        20        30        40        50        60        70        80   

Chain B from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4u7y B 320 DFDDLSRRFEELK 332
                                   329   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U7Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U7Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U7Y)

(-) Gene Ontology  (76, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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  VPS4B_HUMAN | O75351
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IST1_HUMAN | P539903frr 3frs 3jc1 4u7e 4u7i 4wzx
        VPS4B_HUMAN | O753511wr0 1xwi 2cpt 2jqh 2jqk

(-) Related Entries Specified in the PDB File

4u7e 4u7i