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(-) Description

Title :  CK1D IN COMPLEX WITH INHIBITOR
 
Authors :  S. Liu
Date :  03 Jun 14  (Deposition) - 12 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ser/Thr Kinase, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liu
Ck1D In Complex With Inhibitor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CASEIN KINASE I ISOFORM DELTA
    Chains: A, B
    EC Number: 2.7.11.1, 2.7.11.26
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Gene: CSNK1D, HCKID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CKID,TAU-PROTEIN KINASE CSNK1D

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1PFO1Ligand/Ion4-{4-(4-FLUOROPHENYL)-1-[1-(1,2-OXAZOL-3-YLMETHYL)PIPERIDIN-4-YL]-1H-IMIDAZOL-5-YL}PYRIMIDIN-2-AMINE
2SO47Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1PFO1Ligand/Ion4-{4-(4-FLUOROPHENYL)-1-[1-(1,2-OXAZOL-3-YLMETHYL)PIPERIDIN-4-YL]-1H-IMIDAZOL-5-YL}PYRIMIDIN-2-AMINE
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1PFO-1Ligand/Ion4-{4-(4-FLUOROPHENYL)-1-[1-(1,2-OXAZOL-3-YLMETHYL)PIPERIDIN-4-YL]-1H-IMIDAZOL-5-YL}PYRIMIDIN-2-AMINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:23 , ALA A:36 , LYS A:38 , ILE A:68 , MET A:80 , VAL A:81 , MET A:82 , GLU A:83 , LEU A:85 , SER A:88 , GLU A:90 , ASP A:91 , ASP A:132 , LEU A:135 , ILE A:148 , HOH A:609 , ARG B:13binding site for residue PFO A 401
2AC2SOFTWAREARG A:178 , GLN A:214 , GLY A:215 , LYS A:224 , HOH A:543binding site for residue SO4 A 402
3AC3SOFTWAREARG A:127 , LYS A:154 , LYS A:171binding site for residue SO4 A 403
4AC4SOFTWARETHR A:220 , ARG A:222 , GLN A:223 , HOH A:533 , GLN B:271 , ARG B:274binding site for residue SO4 A 404
5AC5SOFTWAREARG B:178 , GLN B:214 , GLY B:215 , LYS B:224binding site for residue SO4 B 401
6AC6SOFTWAREARG B:193 , ARG B:259 , PHE B:260binding site for residue SO4 B 402
7AC7SOFTWAREARG B:127 , LYS B:154 , LYS B:171binding site for residue SO4 B 403
8AC8SOFTWARESER B:121 , ARG B:157 , HIS B:162 , LYS B:263binding site for residue SO4 B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TN6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:16 -Ser A:17
2Ser A:17 -Gly A:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TN6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TN6)

(-) Exons   (0, 0)

(no "Exon" information available for 4TN6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeeeee.......eeeeeee.....eeeeeeee......hhhhhhhhhhhh........eeeeeee..eeeeeee....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.hhhhh..eee......ee.........................hhhhhh....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh......hhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tn6 A   2 ELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNML 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291  


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.......eeeeeee....eeeeeeeee.....hhhhhhhhhhhhh........eeee.....eeeeeee....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.hhhhh..eee......ee.........................hhhhhh....hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.......hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tn6 B   2 ELRVYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLTKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 292
                               ||   14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214 ||    227       237       247       257       267       277       287     
                               5|                                                                                                                                                                                                            216|                                                                        
                                9                                                                                                                                                                                                             220
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TN6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TN6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TN6)

(-) Gene Ontology  (52, 52)

Asymmetric Unit(hide GO term definitions)

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  4tn6
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  KC1D_HUMAN | P48730
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  2.7.11.1
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  2.7.11.26
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KC1D_HUMAN | P48730: 3uys 3uyt 3uzp 4hgt 4hnf 4kb8 4kba 4kbc 4kbk 4tw9 4twc 5ih4 5ih5 5ih6 5mqv 5w4w

(-) Related Entries Specified in the PDB File

4kb8 4KB8 CONTAINS THE SAME CASEIN KINASE PROTEIN WITH DIFFERENT INHIBITOR