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(-) Description

Title :  THE REFINEMENT OF SOUTHERN BEAN MOSAIC VIRUS IN RECIPROCAL SPACE
 
Authors :  M. G. Rossmann
Date :  01 Apr 85  (Deposition) - 17 Jul 85  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Coat Protein (Viral), Icosahedral Virus, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Silva, M. G. Rossmann
The Refinement Of Southern Bean Mosaic Virus In Reciprocal Space
Acta Crystallogr. , Sect. B V. 41 147 1985
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SOUTHERN BEAN MOSAIC VIRUS COAT PROTEIN
    Chains: A, B, C
    Engineered: YES
    Organism Scientific: SOUTHERN BEAN MOSAIC VIRUS
    Organism Taxid: 12139
    Strain: COW PEA STRAIN

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:138 , ASP A:141 , PHE B:199 , ASN B:259 , LEU B:260BINDING SITE FOR RESIDUE CA A 261
2AC2SOFTWAREASP B:138 , ASP B:141 , PHE C:199 , ASN C:259 , LEU C:260BINDING SITE FOR RESIDUE CA B 261
3AC3SOFTWAREPHE A:199 , ASN A:259 , LEU A:260 , ASP C:138 , ASP C:141BINDING SITE FOR RESIDUE CA C 261

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:169 -A:176
2B:169 -B:176
3C:169 -C:176

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4SBV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4SBV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4SBV)

(-) Exons   (0, 0)

(no "Exon" information available for 4SBV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains d4sbva_ A: Sobemovirus coat protein                                                                                                                                                                     SCOP domains
               CATH domains 4sbvA00 A:62-260  [code=2.60.120.20, no name defined]                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeee....eeeeee..hhhhhhhhhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhhh....eeee.......................eee..........ee..hhhhhhhhhh....hhhhhh..eeeeeee.......eeeeeeeeeeeeee....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4sbv A  62 SSMDVTILSHCELSTELAVTVTIVVTSELVMPFTVGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHMGFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVSEKRYPFKTATDYATAVGVNANIGNILVPARLVTAMEGGSSKTAVNTGRLYASYTIRLIEPIAAALNL 260
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         


Chain B from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains d4sbvb_ B: Sobemovirus coat protein                                                                                                                                                                     SCOP domains
               CATH domains 4sbvB00 B:62-260  [code=2.60.120.20, no name defined]                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeee.....eeeee.hhhhhhhhhhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh..eeeeeee......hhhhhhh....hhhhh.eee.hhhhh....ee..hhhhhhhhhhhhhhhhhhhh..eeeeeee.......eeeeeeeeeeeeee....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4sbv B  62 SSMDVTILSHCELSTELAVTVTIVVTSELVMPFTVGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHMGFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVSEKRYPFKTATDYATAVGVNANIGNILVPARLVTAMEGGSSKTAVNTGRLYASYTIRLIEPIAAALNL 260
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251         


Chain C from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d4sbvc_ C: Sobemovirus coat protein                                                                                                                                                                                            SCOP domains
               CATH domains 4sbvC00 C:39-260  [code=2.60.120.20, no name defined]                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................eeee....eeeeeeeeeeeeee.....eeeee.hhhhhh.hhhhhhh...eeeeeeeeeeeee........eeeeeee.........hhhhhh.....eeee......hhhhhhh..........eee.hhhhh....ee..hhhhhhhhhhhh..hhhhhh..eeeeee........eeeeeeeeeeeeee....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4sbv C  39 QAGVSMAPIAQGTMVKLRPPMLRSSMDVTILSHCELSTELAVTVTIVVTSELVMPFTVGTWLRGVAQNWSKYAWVAIRYTYLPSCPTTTSGAIHMGFQYDMADTLPVSVNQLSNLKGYVTGPVWEGQSGLCFVNNTKCPDTSRAITIALDTNEVSEKRYPFKTATDYATAVGVNANIGNILVPARLVTAMEGGSSKTAVNTGRLYASYTIRLIEPIAAALNL 260
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4SBV)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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