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(-) Description

Title :  CRYSTAL STRUCTURE OF YELLOW LUPIN LLPR-10.1A PROTEIN IN COMPLEX WITH TRANS-ZEATIN
 
Authors :  R. Dolot, K. Michalska, J. Sliwiak, G. Bujacz, M. M. Sikorski, M. Jaskol
Date :  17 Dec 14  (Deposition) - 09 Dec 15  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Pr-10 Fold, Ligand Binding, Phytohormone Binding Protein, Trans- Zeatin, Cytokinin, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sliwiak, R. Dolot, K. Michalska, K. Szpotkowski, G. Bujacz, M. Sikorski, M. Jaskolski
Crystallographic And Cd Probing Of Ligand-Induced Conformational Changes In A Plant Pr-10 Protein.
J. Struct. Biol. V. 193 55 2016
PubMed-ID: 26644353  |  Reference-DOI: 10.1016/J.JSB.2015.11.008

(-) Compounds

Molecule 1 - PROTEIN LLPR-10.1A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-3A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LLR18A
    Organism Common: EUROPEAN YELLOW LUPIN
    Organism Scientific: LUPINUS LUTEUS
    Organism Taxid: 3873
    Synonym: LLPR10.1A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZEA5Ligand/Ion(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZEA5Ligand/Ion(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
2ZEA10Ligand/Ion(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:7 , GLN A:9 , TYR A:19 , LEU A:22 , THR A:23 , TYR A:82 , SER A:101 , GLY A:113 , ILE A:115 , GLY A:138 , PHE A:142 , ZEA A:202 , HOH A:335 , HOH A:343 , HOH A:468BINDING SITE FOR RESIDUE ZEA A 201
2AC2SOFTWAREPHE A:5 , ASN A:7 , VAL A:117 , PHE A:119 , ARG A:131 , ASP A:132 , LYS A:135 , ZEA A:201 , HOH A:312 , HOH A:373 , HOH A:399BINDING SITE FOR RESIDUE ZEA A 202
3AC3SOFTWARESER A:26 , ASP A:27 , LYS A:53 , ILE A:55 , HIS A:68 , TYR A:82 , TYR A:99 , LYS A:137 , LEU A:141 , HOH A:494BINDING SITE FOR RESIDUE ZEA A 203
4AC4SOFTWAREHIS A:62 , THR A:63 , GLU A:88BINDING SITE FOR RESIDUE ZEA A 204
5AC5SOFTWAREVAL A:33 , ILE A:34 , GLY A:140 , LYS A:143 , ALA A:144 , HOH A:309 , HOH A:477 , HOH A:485 , HOH A:492 , HOH A:495BINDING SITE FOR RESIDUE ZEA A 205
6AC6SOFTWAREASN A:7 , GLN A:9 , LYS A:135 , PHE A:136 , LEU A:139 , HOH A:418 , HOH A:448BINDING SITE FOR RESIDUE SO4 A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RYV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RYV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RYV)

(-) Exons   (0, 0)

(no "Exon" information available for 4RYV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh..eeeeeeee.......eeeeeeee..eeeeeeeeeeeeehhh.eeeeeeee.......eeeeeeeeeeee.hhh.eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ryv A   1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RYV)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        L18A_LUPLU | P52778: 1icx 4y31 5c9y

(-) Related Entries Specified in the PDB File

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