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(-) Description

Title :  STRUCTURE OF B. SUBTILIS GLNK-ATP COMPLEX TO 2.6 ANGSTROM
 
Authors :  M. A. Schumacher, B. Cuthbert, N. Tonthat, N. G. Chinnam, T. Whitfill
Date :  09 Dec 14  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,D
Keywords :  Pii Protein, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. B. Chinnam, B. Cuthbert, N. K. Tonthat, T. Whitfil
Structures Of Regulatory Machinery Reveal Novel Molecular Mechanisms Controlling B. Subtilis Nitrogen Homeostasis.
Genes Dev. V. 29 451 2015
PubMed-ID: 25691471  |  Reference-DOI: 10.1101/GAD.254714.114

(-) Compounds

Molecule 1 - NITROGEN REGULATORY PII-LIKE PROTEIN
    Chains: A, B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15-B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NRGB, BSU36520
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:16 , GLY A:44 , ARG A:67 , GLY A:96 , ASP A:97 , GLY A:98 , LYS A:99 , THR D:35 , SER D:36 , LEU D:37 , THR D:38 , GLU D:71 , VAL D:73BINDING SITE FOR RESIDUE ATP A 200
2AC2SOFTWARESER B:36 , THR B:38 , GLU B:71 , VAL B:73 , ARG B:112 , HOH B:318 , VAL D:16 , GLY D:44 , ARG D:67 , GLY D:98 , LYS D:99BINDING SITE FOR RESIDUE ATP B 201
3AC3SOFTWARETHR A:35 , SER A:36 , LEU A:37 , THR A:38 , GLU A:71 , VAL A:73 , LEU A:121 , HOH A:307 , VAL B:16 , GLY B:44 , ARG B:67 , PRO B:95 , GLY B:96 , ASP B:97 , GLY B:98 , LYS B:99BINDING SITE FOR RESIDUE ATP B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RX6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RX6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RX6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RX6)

(-) Exons   (0, 0)

(no "Exon" information available for 4RX6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhh.....................................hhhhhhhhhhhhhh........................hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4rx6 A   5 AMSGQMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAKIESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEAL 121
                                    14        24        34        44     || 62        72        82        92       102       112         
                                                                        50|                                                              
                                                                         59                                                              


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....................hhhh.....................hhhhhhhhhhhhhh........................hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 4rx6 B   7 SGQMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKIESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEAL 121
                                    16        26        36        46        56        66        76        86        96       106       116     


Chain D from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhh......................................hhhhhhhhhhhhhh........................hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4rx6 D   7 SGQMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKVKIESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEAL 121
                                    16        26        36        46  ||    64        74        84        94       104       114       
                                                                     49|                                                               
                                                                      58
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RX6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RX6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RX6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NRGB_BACSU | Q07428: 4r25

(-) Related Entries Specified in the PDB File

4r25 APO B. SUBTILIS GLNK STRUCTURE