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(-) Description

Title :  THE USE OF MOLECULAR-REPLACEMENT PHASES FOR THE REFINEMENT OF THE HUMAN RHINOVIRUS 14 STRUCTURE
 
Authors :  E. Arnold, M. G. Rossmann
Date :  25 Jan 88  (Deposition) - 16 Apr 88  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  1,2,3,4
Biol. Unit 1:  1,2,3,4  (60x)
Keywords :  Rhinovirus Coat Protein, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Arnold, M. G. Rossmann
The Use Of Molecular-Replacement Phases For The Refinement Of The Human Rhinovirus 14 Structure.
Acta Crystallogr. , Sect. A V. 44 270 1988
PubMed-ID: 2856083  |  Reference-DOI: 10.1107/S0108767387011875
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
    Chains: 1
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HELA CELLS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Scientific: HUMAN RHINOVIRUS 14
    Organism Taxid: 12131
 
Molecule 2 - HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)
    Chains: 2
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HELA CELLS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Scientific: HUMAN RHINOVIRUS 14
    Organism Taxid: 12131
 
Molecule 3 - HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)
    Chains: 3
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HELA CELLS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Scientific: HUMAN RHINOVIRUS 14
    Organism Taxid: 12131
 
Molecule 4 - HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)
    Chains: 4
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HELA CELLS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Organism Scientific: HUMAN RHINOVIRUS 14
    Organism Taxid: 12131

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : 1234
Biological Unit 1 (60x): 1234

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RHV)

(-) Sites  (0, 0)

(no "Site" information available for 4RHV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RHV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu 2:82 -Pro 2:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RHV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RHV)

(-) Exons   (0, 0)

(no "Exon" information available for 4RHV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4rhv1_ 1: Rhinovirus coat proteins                                                                                                                                                                                                                                               SCOP domains
               CATH domains 4rhv100 1:17-289  [code=2.60.120.20, no name defined]                                                                                                                                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................................hhhhhhh..eeeeeeeeee...............eeeee.....hhhhhhhhhheeeeeeeeeeeeeeee..........eeeeeeee...........hhhhhh...eeeeeee.eeeeeee........eeee.....................eeeeeeee.......eeeeeeeeeeeeeeeeee................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhv 1  17 TVASISSGPKHTQKVPILTANETGATMPVLPSDSIETRTTYMHFNGSETDVECFLGRAACVHVTEIQNKDATGIDNHREAKLFNDWKINLSSLVQLRKKLELFTYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNPKEWDDYTWQSASNPSVFFKVGDTSRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLNHMGSMAFRIVNEHDEHKTLVKIRVYHRAKHVEAWIPRAPRALPYTSIGRTNYPKNTEPVIKKRKGDIKSY 289
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286   


Chain 2 from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains d4rhv.1 4:,2: Rhinovirus coat proteins                                                                                                                                                                                                                          SCOP domains
               CATH domains 4rhv200 2:8-262  [code=2.60.120.20, no name defined]                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..eeeeeeee...........................hhhhhh..eeeeeeee.....eeeeee......hhhhhhhhhhheeeeeeeeeeeee......eeeeeeeee.................................................hhhhhhhheeeeeee...eeeeeee........eee.....eeeeeeeeeeee........eeeeeeeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhv 2   8 GYSDRVQQITLGNSTITTQEAANAVVCYAEWPEYLPDVDASDVNKTSKPDTSVCRFYTLDSKTWTTGSKGWCWKLPDALKDMGVFGQNMFFHSLGRSGYTVHVQCNATKFHSGCLLVVVIPEHQLASHEGGNVSVKYTFTHPGERGIDLSSANEVGGPVKDVLYNMNGTLLGNLLIFPHQFINLRTNNTATIVIPYINSVPIDSMTRHNNVSLMVIPIAPLTVPTGATPSLPITVTIAPMCTEFSGIRSKSIVPQ 262
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257     


Chain 3 from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains d4rhv3_ 3: Rhinovirus coat proteins                                                                                                                                                                                                          SCOP domains
               CATH domains 4rhv300 3:1-236  [code=2.60.120.20, no name defined]                                                                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................................hhhhhhhh.eee...............eee.........eeeee.........hhhhhhhhhheeeeeeeeeeeeee.....eeeeeeeee........hhhhhhhheeeeeee...eeeeeee........eee........eeeeeeeeeeee........eeeeeeeeeeeeeeeee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhv 3   1 GLPTTTLPGSGQFLTTDDRQSPSALPNYEPTPRIHIPGKVHNLLEIIQVDTLIPMNNTHTKDEVNSYLIPLNANRQNEQVFGTNLFIGDGVFKTTLLGEIVQYYTHWSGSLRFSLMYTGPALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIGLQSTIVMTIPWTSGVQFRYTDPDTYTSAGFLSCWYQTSLILPPETTGQVYLLSFISACPDFKLRLMKDTQTISQTVALTE 236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      


Chain 4 from PDB  Type:PROTEIN  Length:40
                                                                        
               SCOP domains d4rhv.1 4:,2: Rhinovirus coat proteins   SCOP domains
               CATH domains 4rhv400 4:29-68 Rhinovirus 14, subunit 4 CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ........................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 4rhv 4  29 INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN  68
                                    38        48        58        68
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RHV)

(-) Gene Ontology  (50, 50)

Asymmetric Unit(hide GO term definitions)

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    Leu 2:82 - Pro 2:83   [ RasMol ]  
 
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  4rhv
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  POLG_HRV14 | P03303
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_HRV14 | P03303: 1d3i 1hri 1hrv 1k5m 1na1 1ncq 1r08 1r09 1rmu 1ruc 1rud 1rue 1ruf 1rug 1ruh 1rui 1ruj 1rvf 1vrh 1xr5 2b0f 2hwb 2hwc 2in2 2r04 2r06 2r07 2rm2 2rmu 2rr1 2rs1 2rs3 2rs5 4pdw 5w3e 5w3l 5w3m 5w3o

(-) Related Entries Specified in the PDB File

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