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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF PYK2 AND PAXILLIN LD MOTIFS
 
Authors :  M. Vanarotti, D. J. Miller, C. D. Guibao, A. Nourse, J. J. Zheng
Date :  13 Aug 14  (Deposition) - 17 Sep 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  4-Helix Bundle, Focal Adhesion, Tyrosine Kinase, Paxillin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. S. Vanarotti, D. J. Miller, C. D. Guibao, A. Nourse, J. J. Zheng
Structural And Mechanistic Insights Into The Interaction Between Pyk2 And Paxillin Ld Motifs.
J. Mol. Biol. V. 426 3985 2014
PubMed-ID: 25174335  |  Reference-DOI: 10.1016/J.JMB.2014.08.014

(-) Compounds

Molecule 1 - PROTEIN-TYROSINE KINASE 2-BETA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentFOCAL ADHESION TARGETING (FAT) DOMAIN (UNP RESIDUES 871- 1005)
    GenePTK2B, FAK2, PYK2, RAFTK
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - PAXILLIN
    ChainsB, C
    EngineeredYES
    FragmentLD4 MOTIF (UNP RESIDUES 139-162)
    Organism CommonBANTAM,CHICKENS
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4R32)

(-) Sites  (0, 0)

(no "Site" information available for 4R32)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R32)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R32)

(-) Exons   (0, 0)

(no "Exon" information available for 4R32)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4r32 A  873 LDRTDDLVYLNVMELVRAVLELKNELSQLPPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLSEEAKRQMLTASHTLAVDAKNLLDAVDQAKVLANLA 1004
                                   882       892       902       912       922       932       942       952       962       972       982       992      1002  

Chain B from PDB  Type:PROTEIN  Length:11
                                            
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                4r32 B  143 SELDRLLLELN  153
                                   152 

Chain C from PDB  Type:PROTEIN  Length:15
                                                
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                4r32 C  140 SNLSELDRLLLELNA  154
                                   149     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R32)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R32)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R32)

(-) Gene Ontology  (159, 187)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAK2_HUMAN | Q142892fo6 2lk4 3cc6 3et7 3fzo 3fzp 3fzr 3fzs 3fzt 3gm1 3gm2 3gm3 3h3c 3u3f 4eku 4h1j 4h1m 4xef 4xek 4xev 5to8
        PAXI_CHICK | P490242l6f 2l6g 2l6h
        PAXI_HUMAN | P490231kky 1kl0 1ow6 1ow7 1ow8 2k2r 2o9v 2vzd 2vzg 2vzi 3gm1 3py7 3rqe 3rqf 3rqg 3u3f 4edn 4xgz 4xh2 5uwh

(-) Related Entries Specified in the PDB File

3u3f THE SAME PROTEIN COMPLEXED WITH PAXILLIN LD4 MOTIF