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(-) Description

Title :  THE CRYSTAL STRUCTURE OF STIV B204 COMPLEXED WITH AMP-PNP
 
Authors :  N. Dellas, S. J. Nicolay, M. J. Young
Date :  12 Aug 14  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  P-Loop, Arginine Finger, Atp Binding, Dna-Dependent Atpase, Walker A Motif, Walker B Motif, P-Loop Atpase, Aaa Atpase, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Dellas, J. C. Snyder, M. Dills, S. J. Nicolay, K. M. Kerchner, S. K. Brumfield, C. M. Lawrence, M. J. Young
Structure-Based Mutagenesis Of Stiv B204 Reveals Essential Residues In The Virion-Associated Dna Packaging Atpase.
J. Virol. 2015
PubMed-ID: 26699645  |  Reference-DOI: 10.1128/JVI.02435-15

(-) Compounds

Molecule 1 - STIV B204 ATPASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: ROSETTA(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: B164, B204
    Organism Scientific: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 1
    Organism Taxid: 269145

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:39 , HIS A:41 , ASP A:73 , HIS A:108BINDING SITE FOR RESIDUE ZN A 300
2AC2SOFTWARELYS A:13 , ARG A:14 , SER A:15 , GLY A:16 , SER A:18 , TYR A:19 , LYS A:22 , GLU A:49 , TYR A:186 , ILE A:204 , HIS A:206 , HOH A:402 , HOH A:405 , HOH A:409BINDING SITE FOR RESIDUE ANP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R2I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R2I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R2I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R2I)

(-) Exons   (0, 0)

(no "Exon" information available for 4R2I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh...eeeee.......hhhhhhh....hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhh.....hhhhhhhhhhhhhhheeeeeee.hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhh......eeeee....eeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r2i A   1 MNPDDIVVIIGRKRSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNVVTLSDIVSKQYVVVYDREKNDVFFEKLWNGAKLHAKKWGTSVLIIDEAYYHFKYRQKVTPAIDEALHANRHAGIGLILSTQRVYDLMPIVYKQADLIIMFYTREPNELKWISKYISTEAAEKVKTLKQYYFLIYDVNSQMIKIHKPIHHH 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R2I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R2I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R2I)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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UniProtKB/TrEMBL
        Q6Q0J1_9VIRU | Q6Q0J1: 4r2h

(-) Related Entries Specified in the PDB File

4r2h