4PRO - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   ALPHA-LYTIC PROTEASE COMPLEXED WITH PRO REGION

Authors :   N. K. Sauter, T. Mau, S. D. Rader, D. A. Agard

Date :   01 Oct 98 (Deposition) - 18 May 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,C  (1x)
Biol. Unit 4: B,D  (1x)
Biol. Unit 5: A,B,C,D  (1x)

Keywords :   Pro Region, Foldase, Protein Folding, Serine Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. K. Sauter, T. Mau, S. D. Rader, D. A. Agard
Structure Of Alpha-Lytic Protease Complexed With Its Pro Region.
Nat. Struct. Biol. V. 5 945 1998
PubMed-ID: 9808037 | Reference-DOI: 10.1038/2919

Molecule 1 - ALPHA-LYTIC PROTEASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	INCLUSION BODIES
	Expression System Gene	:	T7
	Expression System Plasmid	:	PT7PRO
	Expression System Taxid	:	562
	Expression System Vector Type	:	T7 EXPRESSION SYSTEM
	Fragment	:	CHAIN A, B, MATURE PROTEASE. CHAIN C, D, PRO REGION
	Fragment (source)	:	CHAIN C, D
	Gene	:	T7
	Mutation	:	YES
	Organism Scientific	:	LYSOBACTER ENZYMOGENES
	Organism Taxid	:	69

Molecule 2 - ALPHA-LYTIC PROTEASE
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	INCLUSION BODIES
	Expression System Gene	:	T7
	Expression System Plasmid	:	PT7PRO
	Expression System Taxid	:	562
	Expression System Vector Type	:	T7 EXPRESSION SYSTEM
	Fragment	:	CHAIN A, B, MATURE PROTEASE. CHAIN C, D, PRO REGION
	Fragment (source)	:	CHAIN C, D
	Gene	:	T7
	Mutation	:	YES
	Organism Scientific	:	LYSOBACTER ENZYMOGENES
	Organism Taxid	:	69

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A		C
Biological Unit 4 (1x)	:		B		D
Biological Unit 5 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4PRO)

(no "Site" information available for 4PRO)

Asymmetric Unit

No.	Residues
1	A:17	-	A:37
2	A:101	-	A:111
3	A:137	-	A:170
4	B:17	-	B:37
5	B:101	-	B:111
6	B:137	-	B:170

Asymmetric Unit

No.	Residues
1	Phe A:59	-	Pro A:60
2	Phe B:59	-	Pro B:60

(no "SAP(SNP)/Variant" information available for 4PRO)

(no "PROSITE Motif" information available for 4PRO)

(no "Exon" information available for 4PRO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4proa_ A: alpha-Lytic protease                                                                                                                                                                        SCOP domains
               CATH domains --4proA01 A:3-76,A:184-196 Trypsin-like serine proteases                    4proA02 A:77-183 Trypsin-like serine proteases                                                             4proA01      -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee...eeee..eeeee..eeeeee.hhh.....eeee..eeeeeeeeee.....eeeeee........eeee..eeee...........eeeeee...eeeeee.......eee..eee...eee...........eeee....eeeeeeee............hhh..eeeeehhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pro A   1 ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVASGGNVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG 198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4prob_ B: alpha-Lytic protease                                                                                                                                                                        SCOP domains
               CATH domains --4proB01 B:3-76,B:184-196 Trypsin-like serine proteases                    4proB02 B:77-183 Trypsin-like serine proteases                                                             4proB01      -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee...eeee..eeeee..eeeeee.hhh.....eeee..eeeeeeeeee.....eeeeee........eeee..eeee...........eeeeee...eeeeee.......eee..eee...eee...........eee.....eeeeeeee............hhh..eeeeehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pro B   1 ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVASGGNVQSNGNNCGIPASQRSSLFERLQPILSQYGLSLVTG 198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain C from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains d4proc1 C:6-85 Alpha-lytic protease prodomain                                   d4proc2 C:86-166 Alpha-lytic protease prodomain                            SCOP domains
               CATH domains 4proC01 C:6-84  [code=3.30.300.50, no name defined]                            4proC02 C:85-166  [code=3.30.300.50, no name defined]                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeeeee............eeee....hhhhhhhhhhhhhhh......eeeeeeehhh.eeeeeee...hhhhhhhhhhh...hhheeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pro C   6 PQLKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRYSLKQLQSAMEQLDAGANAPLDGVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIESSPGKLQTT 166
                                    15        25        35        45        55        65        75        85        95       112       122       132       142       152       162    
                                                                                                                            104|                                                      
                                                                                                                             112

Chain D from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains d4prod1 D:5-85 Alpha-lytic protease prodomain                                    d4prod2 D:86-166 Alpha-lytic protease prodomain                            SCOP domains
               CATH domains -4proD01 D:6-84  [code=3.30.300.50, no name defined]                            4proD02 D:85-165  [code=3.30.300.50, no name defined]                     - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhh...eeeee.....eeeeeee...........eeeee....hhhhhhhhhhhhhhh......eeeeeeehhh.eeeeeee...hhhhhhhhhhh...hhheeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pro D   5 DPQLKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRYSLKQLQSAMEQLDAGANARLDGVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIESSPGKLQTT 166
                                    14        24        34        44        54        64        74        84        94       104||     121       131       141       151       161     
                                                                                                                              105|                                                     
                                                                                                                               113

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: GMP Synthetase; Chain A, domain 3 (192)

Homologous Superfamily: [code=3.30.300.50, no name defined] (3)

Organism_taxid (lysobacter enzymogenes) (1)

1a	4proD02	D:85-165
1b	4proC02	C:85-166
1c	4proC01	C:6-84
1d	4proD01	D:6-84

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Thrombin, subunit H (1535)

Homologous Superfamily: Trypsin-like serine proteases (1488)

Organism_taxid (lysobacter enzymogenes) (1)

2a	4proA02	A:77-183
2b	4proB02	B:77-183
2c	4proA01	A:3-76,A:184-196
2d	4proB01	B:3-76,B:184-196

(no "Pfam Domain" information available for 4PRO)

Asymmetric Unit(hide GO term definitions)

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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4pro)

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	Cis Peptide Bonds
		Phe A:59 - Pro A:60	[ RasMol ]
		Phe B:59 - Pro B:60	[ RasMol ]

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (6, 6)

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