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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PDE4D2 WITH COMPOUND 2
 
Authors :  S. C. Feil, M. W. Parker
Date :  15 Jan 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Catalytic Mechanism, Camp Hydrolysis, Hydrolase-Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Howard, J. L. Nankervis, S. C. Feil, D. T. Manallack, J. K. Holien, Z. Zhen, I. G. Jennings, B. M. Abbott, M. W. Parker, P. E. Thompson
The Pde Inhibition Profile Of Ly294002 And Tetrahydropyrany Analogues Reveals A Chromone Motif For The Development Of Pde Inhibitors
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D
    Chains: A, B, C, D
    EC Number: 3.1.4.53
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)STAR ROSETTA
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 381-741
    Gene: PDE4D, DPDE3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DPDE3, PDE43

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 55)

Asymmetric Unit (6, 55)
No.NameCountTypeFull Name
12SR4Ligand/Ion(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2DMS6Ligand/IonDIMETHYL SULFOXIDE
3EDO32Ligand/Ion1,2-ETHANEDIOL
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN8Ligand/IonZINC ION
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
12SR1Ligand/Ion(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3EDO8Ligand/Ion1,2-ETHANEDIOL
4EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
12SR1Ligand/Ion(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3EDO7Ligand/Ion1,2-ETHANEDIOL
4EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 11)
No.NameCountTypeFull Name
12SR1Ligand/Ion(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2DMS-1Ligand/IonDIMETHYL SULFOXIDE
3EDO9Ligand/Ion1,2-ETHANEDIOL
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION
Biological Unit 4 (4, 14)
No.NameCountTypeFull Name
12SR1Ligand/Ion(2R)-8-(3,4-DIMETHOXYPHENYL)-6-METHYL-2-(TETRAHYDRO-2H-PYRAN-4-YL)-2H-CHROMEN-4-OL
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3EDO8Ligand/Ion1,2-ETHANEDIOL
4EPE-1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:160 , MET A:273 , LEU A:319 , MET A:357 , SER A:368 , GLN A:369 , PHE A:372 , ILE A:376BINDING SITE FOR RESIDUE 2SR A 501
02AC2SOFTWAREGLU A:218 , LYS C:239BINDING SITE FOR RESIDUE EDO A 502
03AC3SOFTWARELEU A:132 , LYS A:136 , HOH A:628 , ASP D:394BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREGLU A:150 , ASP A:151 , TYR A:153 , HOH A:640 , ARG C:346BINDING SITE FOR RESIDUE PEG A 504
05AC5SOFTWARELYS A:255 , GLN A:256 , GLU D:182 , DMS D:504BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWAREPHE A:238 , PHE A:249 , ARG A:257 , HOH A:609 , HOH A:631BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWAREASN A:278BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWARELYS A:239 , GLN A:242 , GLU A:243 , HOH A:608 , ASN C:216 , GLN D:242BINDING SITE FOR RESIDUE EDO A 508
09AC9SOFTWAREHIS A:164 , HIS A:200 , ASP A:201 , ASP A:318 , HOH A:668 , HOH A:707BINDING SITE FOR RESIDUE ZN A 509
10BC1SOFTWAREASP A:201 , HOH A:606 , HOH A:614 , HOH A:616 , HOH A:668 , HOH A:708BINDING SITE FOR RESIDUE ZN A 510
11BC2SOFTWAREPRO A:138 , ASP A:140 , THR A:141 , HOH A:686BINDING SITE FOR RESIDUE DMS A 511
12BC3SOFTWARELYS A:262 , ILE A:265 , ASP A:266 , HOH A:633 , HOH B:616BINDING SITE FOR RESIDUE EDO A 512
13BC4SOFTWAREHIS A:105 , VAL A:106 , PHE A:107 , ARG A:108 , GLN A:327 , GLN A:331BINDING SITE FOR RESIDUE DMS A 513
14BC5SOFTWAREHIS A:152 , GLU A:243 , SER C:217 , ARG C:350BINDING SITE FOR RESIDUE EDO A 514
15BC6SOFTWAREHIS B:160 , MET B:273 , LEU B:319 , MET B:357 , SER B:368 , GLN B:369 , PHE B:372 , DMS B:510 , HOH B:613BINDING SITE FOR RESIDUE 2SR B 501
16BC7SOFTWAREHIS B:164 , HIS B:200 , ASP B:201 , ASP B:318 , HOH B:617 , HOH B:690BINDING SITE FOR RESIDUE ZN B 502
17BC8SOFTWAREASP B:201 , HOH B:603 , HOH B:606 , HOH B:609 , HOH B:617 , HOH B:689BINDING SITE FOR RESIDUE ZN B 503
18BC9SOFTWARESER B:208 , PHE B:340 , PRO B:356 , CYS B:358 , HOH B:692BINDING SITE FOR RESIDUE EDO B 504
19CC1SOFTWAREPHE B:107 , GLN B:331 , ASP B:334 , ARG B:335BINDING SITE FOR RESIDUE EDO B 505
20CC2SOFTWAREGLN A:258 , ASN B:214 , EDO B:507 , HOH B:625 , SER D:294 , SER D:295BINDING SITE FOR RESIDUE EDO B 506
21CC3SOFTWAREPHE B:211 , ASN B:214 , GLU B:347 , MET B:352 , GLU B:353 , SER B:355 , EDO B:506 , HOH B:625BINDING SITE FOR RESIDUE EDO B 507
22CC4SOFTWAREALA B:183BINDING SITE FOR RESIDUE EDO B 508
23CC5SOFTWARELYS B:101 , TRP B:102 , GLY B:103 , LEU B:104 , VAL B:106 , ASP B:167 , GLN B:170 , LYS B:324BINDING SITE FOR RESIDUE EDO B 509
24CC6SOFTWARETYR B:159 , ASN B:321 , PRO B:322 , THR B:333 , PHE B:372 , 2SR B:501BINDING SITE FOR RESIDUE DMS B 510
25CC7SOFTWAREASP B:140BINDING SITE FOR RESIDUE EDO B 511
26CC8SOFTWAREGLU B:349 , ARG B:350 , ASP D:140 , ILE D:143 , THR D:144BINDING SITE FOR RESIDUE DMS B 512
27CC9SOFTWARETHR C:148 , HIS C:152 , GLU C:243BINDING SITE FOR RESIDUE EDO C 501
28DC1SOFTWAREHIS C:160 , MET C:273 , LEU C:319 , MET C:357 , GLN C:369 , PHE C:372BINDING SITE FOR RESIDUE 2SR C 502
29DC2SOFTWAREASN C:115 , ALA C:155 , ASN C:161 , ASN C:162 , ILE C:163 , ARG C:335BINDING SITE FOR RESIDUE EDO C 503
30DC3SOFTWAREHIS B:389 , PRO B:390 , THR C:134 , PHE C:135 , ASN C:251 , GLN C:256BINDING SITE FOR RESIDUE EDO C 504
31DC4SOFTWAREPRO B:179 , LEU C:188 , LYS C:255BINDING SITE FOR RESIDUE EDO C 505
32DC5SOFTWAREHIS C:105 , VAL C:106 , PHE C:107 , ARG C:108 , GLU C:111 , GLN C:327 , LEU C:328 , GLN C:331BINDING SITE FOR RESIDUE EPE C 506
33DC6SOFTWARELYS C:262 , ASP C:266 , ASN D:224 , ASP D:225BINDING SITE FOR RESIDUE EDO C 507
34DC7SOFTWAREASP C:266 , LEU C:269 , LYS C:275 , GLN C:311BINDING SITE FOR RESIDUE EDO C 508
35DC8SOFTWAREASN C:115 , GLU C:150 , ASP C:151 , TYR C:153 , ASN C:162BINDING SITE FOR RESIDUE EDO C 509
36DC9SOFTWAREHIS C:164 , HIS C:200 , ASP C:201 , ASP C:318 , HOH C:601 , HOH C:666BINDING SITE FOR RESIDUE ZN C 510
37EC1SOFTWAREASP C:201 , HOH C:602 , HOH C:613 , HOH C:664 , HOH C:665 , HOH C:666BINDING SITE FOR RESIDUE ZN C 511
38EC2SOFTWARELEU C:219 , MET C:222 , TYR C:223BINDING SITE FOR RESIDUE EDO C 512
39EC3SOFTWARELEU C:175 , THR C:178 , TRP C:384 , ASP C:391 , ALA C:392BINDING SITE FOR RESIDUE EDO C 513
40EC4SOFTWAREPHE B:211 , THR B:215 , ARG B:350 , THR D:148 , HIS D:152 , GLU D:243 , HOH D:691BINDING SITE FOR RESIDUE EDO D 501
41EC5SOFTWAREHIS D:160 , MET D:273 , LEU D:319 , PHE D:340 , MET D:357 , SER D:368 , GLN D:369 , PHE D:372 , ILE D:376BINDING SITE FOR RESIDUE 2SR D 502
42EC6SOFTWARETHR D:178 , TRP D:384 , VAL D:388 , ASP D:391 , PEG D:515 , PEG D:516 , HOH D:671BINDING SITE FOR RESIDUE EDO D 503
43EC7SOFTWAREEDO A:505 , SER D:177 , GLU D:182BINDING SITE FOR RESIDUE DMS D 504
44EC8SOFTWAREVAL D:120 , HIS D:123BINDING SITE FOR RESIDUE EDO D 505
45EC9SOFTWAREASP D:266 , GLN D:311 , PEG D:507BINDING SITE FOR RESIDUE EDO D 506
46FC1SOFTWAREASP C:225 , HOH C:628 , LYS D:262 , ASP D:266 , EDO D:506 , HOH D:670BINDING SITE FOR RESIDUE PEG D 507
47FC2SOFTWAREGLU D:150 , ASP D:151 , TYR D:153 , ASN D:162 , EDO D:510BINDING SITE FOR RESIDUE DMS D 508
48FC3SOFTWAREASP D:266 , LYS D:275 , GLN D:311BINDING SITE FOR RESIDUE EDO D 509
49FC4SOFTWAREASN D:115 , ALA D:155 , ASN D:161 , ASN D:162 , ILE D:163 , DMS D:508BINDING SITE FOR RESIDUE EDO D 510
50FC5SOFTWAREGLU D:128 , HIS D:173 , SER D:177BINDING SITE FOR RESIDUE EDO D 511
51FC6SOFTWAREHIS D:164 , HIS D:200 , ASP D:201 , ASP D:318 , HOH D:711 , HOH D:712BINDING SITE FOR RESIDUE ZN D 512
52FC7SOFTWAREASP D:201 , HOH D:606 , HOH D:623 , HOH D:662 , HOH D:711 , HOH D:713BINDING SITE FOR RESIDUE ZN D 513
53FC8SOFTWARETHR A:134 , ASN A:251 , GLN A:256 , PRO D:179 , ASP D:391 , HOH D:717BINDING SITE FOR RESIDUE EDO D 514
54FC9SOFTWARETHR A:134 , HOH A:661 , ASP D:391 , EDO D:503 , PEG D:516 , HOH D:717BINDING SITE FOR RESIDUE PEG D 515
55GC1SOFTWARELYS D:101 , TRP D:102 , VAL D:174 , ASP D:394 , ILE D:395 , EDO D:503 , PEG D:515 , HOH D:615BINDING SITE FOR RESIDUE PEG D 516

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OGB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1His A:389 -Pro A:390
2His B:389 -Pro B:390
3His C:389 -Pro C:390
4His D:389 -Pro D:390

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OGB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OGB)

(-) Exons   (0, 0)

(no "Exon" information available for 4OGB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogb A  83 GVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTI 410
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402        


Chain B from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogb B  92 LAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQ 412
                                   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411 


Chain C from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ogb C  86 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTI 410
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     


Chain D from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ogb D  88 QEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIP 411
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OGB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OGB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OGB)

(-) Gene Ontology  (52, 52)

Asymmetric Unit(hide GO term definitions)

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  PDE4D_HUMAN | Q08499
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 Related Entries

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        PDE4D_HUMAN | Q08499: 1e9k 1mkd 1oyn 1ptw 1q9m 1tb7 1tbb 1xom 1xon 1xoq 1xor 1y2b 1y2c 1y2d 1y2e 1y2k 1zkn 2fm0 2fm5 2pw3 2qyn 3g4g 3g4i 3g4k 3g4l 3g58 3iad 3iak 3k4s 3sl3 3sl4 3sl5 3sl6 3sl8 3v9b 4w1o 4wcu 5k1i 5k32 5tkb 5wqa

(-) Related Entries Specified in the PDB File

1ptw SAME PROTEIN WITH CAMP
3sl3 APO FORM OF THE SAME PROTEIN
3sl4 SAME PROTEIN COMPLEXED WITH COMPOUND 12D
3sl5 SAME PROTEIN COMPLEXED WITH COMPOUND 10D
3sl6 SAME PROTEIN COMPLEXED WITH COMPOUND 12C
3sl8 SAME PROTEIN COMPLEXED WITH COMPOUND 10O