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(-) Description

Title :  CCML FROM THERMOSYNECHOCOCCUS ELONGATUS BP-1
 
Authors :  M. S. Kimber, R. J. Demers
Date :  17 Oct 13  (Deposition) - 12 Mar 14  (Release) - 16 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Ccml, Stranded Beta Barrel, Bacterial Microcompartment Vertex Protein, Carboxysome, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. J. Keeling, B. Samborska, R. W. Demers, M. S. Kimber
Interactions And Structural Variability Of Beta-Carboxysoma Shell Protein Ccml.
Photosynth. Res. V. 121 125 2014
PubMed-ID: 24504539  |  Reference-DOI: 10.1007/S11120-014-9973-Z

(-) Compounds

Molecule 1 - CARBON DIOXIDE CONCENTRATING MECHANISM PROTEIN
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneCCML
    Organism ScientificTHERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid197221
    StrainBP-1

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2SO46Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:61 , HOH A:303 , HOH A:304 , HOH A:308 , HOH A:314 , HOH A:332 , HOH A:337 , HOH A:341 , SER B:61 , SER C:61 , HOH C:205 , SER D:61 , SER E:61BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREGLY A:48 , HOH A:316 , HOH B:303 , HOH C:218 , HOH C:219BINDING SITE FOR RESIDUE MG A 202
3AC3SOFTWARELYS B:2 , ARG B:59 , HOH C:217BINDING SITE FOR RESIDUE SO4 B 201
4AC4SOFTWARELYS B:15 , THR B:20 , GLY B:21BINDING SITE FOR RESIDUE SO4 B 202
5AC5SOFTWARELYS D:15 , THR D:20 , GLY D:21 , HOH D:326BINDING SITE FOR RESIDUE SO4 D 201
6AC6SOFTWARELYS E:15 , THR E:20 , GLY E:21 , HOH E:330BINDING SITE FOR RESIDUE SO4 E 201
7AC7SOFTWAREILE B:67 , ASN B:68 , HOH B:310 , HOH B:325 , ASN E:68 , LYS E:72BINDING SITE FOR RESIDUE SO4 E 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N8F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N8F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N8F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N8F)

(-) Exons   (0, 0)

(no "Exon" information available for 4N8F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains d4n8fa_ A: Carbon dioxide concentrating mechanism protein CcmL                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeee.........eeeeee.hhhhhh.........eeeeee..eeee....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  4n8f A  1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSRDNYLLYSK 95
                                    10        20        30        40        50        60        70        80        90     

Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains d4n8fb_ B: Carbon dioxide concentrating mechanism protein CcmL                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....hhhhh..eeeeeeee.....eeeeeeeeee........eeeeee.hhhhhh.........eeeeee..eeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  4n8f B  1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSRDNYLLYSK 95
                                    10        20        30        40        50        60        70        80        90     

Chain C from PDB  Type:PROTEIN  Length:97
                                                                                                                                
               SCOP domains d4n8fc_ C: Carbon dioxide concentrating mechanism protein CcmL                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.hhh.eeeeeeeeee........eeeeee.hhhhhh.........eeeeee..eeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  4n8f C  1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSRDNYLLYSKRT 97
                                    10        20        30        40        50        60        70        80        90       

Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains d4n8fd_ D: Carbon dioxide concentrating mechanism protein CcmL                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh...eeeeeee.....eeeeeeeeee........eeeeee.hhhhhh.........eeeeee..eee....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  4n8f D  1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSRDNYLLYSK 95
                                    10        20        30        40        50        60        70        80        90     

Chain E from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains d4n8fe_ E: Carbon dioxide concentrating mechanism protein CcmL                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..ee.hhhh..eeeeeeee.....eeeeeeeeee........eeeeee.hhhhhh.........eeeeee..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  4n8f E  1 MKIARVCGTVTSTQKEDTLTGVKFLVLQYLGEDGEFLPDYEVAADTVGAGQDEWVLVSRGSAARHIINGTDKPIDAAVVAIIDTVSRDNYLLYSK 95
                                    10        20        30        40        50        60        70        80        90     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N8F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N8F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4N8F)

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  Cis Peptide Bonds
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 Related Entries

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UniProtKB/TrEMBL
        Q8DKB4_THEEB | Q8DKB44jvz

(-) Related Entries Specified in the PDB File

4n8x