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(-) Description

Title :  CRYSTAL STRUCTURE OF EUKARYOTIC TRANSLATION INITIATION FACTOR EIF5B (517-1116) FROM CHAETOMIUM THERMOPHILUM, APO FORM
 
Authors :  B. Kuhle, R. Ficner
Date :  07 Oct 13  (Deposition) - 09 Jul 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Translation Initiation, Gtpase, Eif5B/If2, Subunit Joining, Ribosome, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Kuhle, R. Ficner
Eif5B Employs A Novel Domain Release Mechanism To Catalyze Ribosomal Subunit Joining.
Embo J. V. 33 1177 2014
PubMed-ID: 24686316  |  Reference-DOI: 10.1002/EMBJ.201387344

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 5B-LIKE PROTEIN, EIF5B(517-C)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 517-1092
    Gene: CTHT_0029840
    Organism Scientific: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1LAC1Ligand/IonLACTIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1LAC1Ligand/IonLACTIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1LAC2Ligand/IonLACTIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:892 , CYS A:893 , ARG A:1084 , LYS A:1091 , LYS A:1110BINDING SITE FOR RESIDUE LAC A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N3N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:819 -Ala A:820
2Asn A:996 -Pro A:997

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N3N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N3N)

(-) Exons   (0, 0)

(no "Exon" information available for 4N3N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:587
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..hhhhhhhhhh........eee..eeeeehhhhhhhhhhhh..........eeeee....hhhhh.hhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhh..eeeeeehhhhh.........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....eee.hhh......eeeee.......hhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee...eeeeeeeeee.eee...eeee......eeee..eeee....eee.eee..eeeeee.............ee.....hhhhhhhhhhhhhhhhhh........eeeee.hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee....eeeeeeeeeeeee...eeeeeee......eeeeeeeeeeeeee..eee.eee.....eeeeee......hhhhhh.....eee..hhhhhhhhhhhh....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4n3n A  514 SHMNKDNLRSPICCILGGKTKLLDKIRQTNVQAGGITQQIGATYFPVEAIKQKTAVVNKDGKFEFKVPGLLIIDTPGHESFSNLRSRGSSLCNIAILVVDIMHGLEPQTIESLRLLRERKTPFVVALNKIDRLYGWKKIENNGFRESFALQNKAVQNEFRNRLDQVKLQFAEQGFNSELFYENKNFARYVSLVPTSAHTGEGIPDMLKLIVQLCQERMASSLMYLSELQATVLEVKAIEGFGVTIDVILSNGILREGDRIVLCGLEGPIKTNIRALLTPAPYIHHKEVKAAQGVKISAPGLEGAIAGSRLLVVGPDDDEEELEEEVESDLQSLFSRVEKTGKGVSVQASTLGSLEALLDFLKDCKIPVANVGIGPVYKRDVMQCGIMLEKAPDYAVMLCFDVKVDKEAQQYADENGIKIFTADIIYHLFDQFTKHMQEQLEKKKEESKMLAVFPCVLNPVAVFNKTNPIVVGVDVVDGQLKLNTPIAAVKMNPTTGQKEIISLGRVTGIERDHKPLQVCKKGQPAVAIKIEMGGHQPAYGRHLDEKDVLYSHISRASIDVLKQFYRDVVTTDEWQLIIKLKSVFDVQ 1116
                                   523      |537       547 ||    560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800||     819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109       
                                          530|           549|                                                                                                                                                                                                                                                     801|                                                                                                                                                                                                                                                                                                                 
                                           535            553                                                                                                                                                                                                                                                      811
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N3N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N3N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N3N)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        IF2P_CHATD | G0S8G9: 4n3g 4ncl 4ncn 4tmt 4tmv 4tmw 4tmx 4tmz 4tn1

(-) Related Entries Specified in the PDB File

4n3g