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(-) Description

Title :  CRYSTAL STRUCTURE OF WILD-TYPE UNPHOSPHORYLATED PMM/PGM
 
Authors :  Y. Lee, L. Beamer
Date :  17 Sep 13  (Deposition) - 08 Jan 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Lee, M. T. Villar, A. Artigues, L. J. Beamer
Promotion Of Enzyme Flexibility By Dephosphorylation And Coupling To The Catalytic Mechanism Of A Phosphohexomutase.
J. Biol. Chem. V. 289 4674 2014
PubMed-ID: 24403075  |  Reference-DOI: 10.1074/JBC.M113.532226

(-) Compounds

Molecule 1 - PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE
    Chains: A
    EC Number: 5.4.2.2, 5.4.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 9-463
    Gene: ALGC, PA5322
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: PMM / PGM

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 14)

Asymmetric/Biological Unit (5, 14)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
3PGE3Ligand/IonTRIETHYLENE GLYCOL
4TLA1Ligand/IonL(+)-TARTARIC ACID
5ZN1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:118 , ASP A:242 , ASP A:244 , ASP A:246 , TLA A:502BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREARG A:15 , SER A:108 , HIS A:109 , LYS A:118 , ASP A:242 , ASP A:244 , ASP A:246 , ARG A:247 , HIS A:329 , ZN A:501 , HOH A:745BINDING SITE FOR RESIDUE TLA A 502
03AC3SOFTWARETHR A:404 , THR A:405 , LEU A:406BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREGLU A:375 , ARG A:432BINDING SITE FOR RESIDUE PEG A 504
05AC5SOFTWAREGLU A:30 , GLN A:67 , PGE A:510BINDING SITE FOR RESIDUE PEG A 505
06AC6SOFTWAREILE A:138BINDING SITE FOR RESIDUE PEG A 506
07AC7SOFTWARETYR A:92 , VAL A:96BINDING SITE FOR RESIDUE PEG A 507
08AC8SOFTWAREASN A:128 , LYS A:305 , LEU A:310 , HOH A:684BINDING SITE FOR RESIDUE PEG A 508
09AC9SOFTWARELEU A:266 , LYS A:269 , SER A:273 , HOH A:655BINDING SITE FOR RESIDUE PGE A 509
10BC1SOFTWAREASP A:74 , GLY A:146 , PEG A:505BINDING SITE FOR RESIDUE PGE A 510
11BC2SOFTWAREARG A:288 , ALA A:292 , ASP A:383 , PRO A:414 , HOH A:814 , HOH A:817BINDING SITE FOR RESIDUE PGE A 511
12BC3SOFTWAREPRO A:301 , VAL A:302 , MET A:303 , HOH A:735 , HOH A:781BINDING SITE FOR RESIDUE EDO A 512
13BC4SOFTWAREARG A:421 , SER A:423 , ASN A:424 , THR A:425BINDING SITE FOR RESIDUE EDO A 513
14BC5SOFTWAREARG A:335 , PHE A:337BINDING SITE FOR RESIDUE EDO A 514

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MRQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MRQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MRQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MRQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4MRQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4mrqa1 A:9-154 automated matches                                                                                                                 d4mrqa2 A:155-258 automated matches                                                                     d4mrqa3 A:259-367 automated matches                                                                          d4mrqa4 A:368-463 automated matches                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eeee.....hhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh...eeeee........eeeeeeee..ee..hhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhhhh.eeeeee................hhhhhhhhhhhhhhh...eeeee......eeeee....eehhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh..eeeee..hhhhhhhhhhhhh..eee.....eee........hhhhhhhhhhhhhh....hhhhhhhh....ee...eeee....hhhhhhhhhhhhh.....eee....eeeee..eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mrq A   9 LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF 463
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MRQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MRQ)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALGC_PSEAE | P26276: 1k2y 1k35 1p5d 1p5g 1pcj 1pcm 2fkf 2fkm 2h4l 2h5a 3bkq 3c04 3rsm 4il8

(-) Related Entries Specified in the PDB File

1k2y 1k35 1p5d 1p5g