4MA3 - JenaLib

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Title :   CRYSTAL STRUCTURE OF ANTI-HINGE RABBIT ANTIBODY C2095

Authors :   T. Malia, A. Teplyakov, G. L. Gilliland

Date :   15 Aug 13 (Deposition) - 26 Mar 14 (Release) - 06 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,H,L
Biol. Unit 1: H,L  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Immunoglobulin Fold, Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. J. Malia, A. Teplyakov, R. J. Brezski, J. Luo, M. Kinder, R. W. Sweet, J. C. Almagro, R. E. Jordan, G. L. Gilliland
Structure And Specificity Of An Antibody Targeting A Proteolytically Cleaved Igg Hinge.
Proteins V. 82 1656 2014
PubMed-ID: 24638881 | Reference-DOI: 10.1002/PROT.24545

Molecule 1 - C2095 LIGHT CHAIN
	Chains	:	L, A
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	SEE REMARK 999
	Organism Common	:	RABBIT, HUMAN
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS, HOMO SAPIENS
	Organism Taxid	:	9986, 9606

Molecule 2 - C2095 HEAVY CHAIN
	Chains	:	H, B
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	FD, SEE REMARK 999
	Organism Common	:	RABBIT, HUMAN
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS, HOMO SAPIENS
	Organism Taxid	:	9986, 9606

		1	2	3	4
Asymmetric Unit	:	A	B	H	L
Biological Unit 1 (1x)	:			H	L
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	PCA	4	Mod. Amino Acid	PYROGLUTAMIC ACID
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	PCA	2	Mod. Amino Acid	PYROGLUTAMIC ACID
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	PCA	2	Mod. Amino Acid	PYROGLUTAMIC ACID
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN H:34 , ASN H:205 , SO4 H:301 , HIS L:101	BINDING SITE FOR RESIDUE ACT L 301
2	AC2	SOFTWARE	THR B:161 , SER L:60 , ARG L:62 , GLN L:80	BINDING SITE FOR RESIDUE SO4 L 302
3	AC3	SOFTWARE	PRO H:32 , GLY H:96 , LEU H:97 , TYR H:98 , ASN H:99 , TYR H:101 , HIS L:101 , ACT L:301	BINDING SITE FOR RESIDUE SO4 H 301
4	AC4	SOFTWARE	SER B:27 , PHE H:26 , SER H:27 , SER H:30 , TYR H:31 , HOH H:414	BINDING SITE FOR RESIDUE SO4 H 302
5	AC5	SOFTWARE	SER A:60 , ARG A:62 , HOH A:436 , THR H:161	BINDING SITE FOR RESIDUE SO4 A 301
6	AC6	SOFTWARE	GLY B:51 , THR B:52 , SER B:53 , GLY B:54 , ASN B:55 , HOH B:473	BINDING SITE FOR RESIDUE SO4 B 301

Asymmetric Unit

No.	Residues
1	A:22	-	A:89
2	A:95	-	A:100
3	A:140	-	A:200
4	B:21	-	B:93
5	B:141	-	B:197
6	H:21	-	H:93
7	H:141	-	H:197
8	L:22	-	L:89
9	L:95	-	L:100
10	L:140	-	L:200

Asymmetric Unit

No.	Residues
1	Thr L:6	-	Pro L:7
2	Tyr L:146	-	Pro L:147
3	Phe H:147	-	Pro H:148
4	Glu H:149	-	Pro H:150
5	Thr A:6	-	Pro A:7
6	Tyr A:146	-	Pro A:147
7	Phe B:147	-	Pro B:148
8	Glu B:149	-	Pro B:150

(no "SAP(SNP)/Variant" information available for 4MA3)

(no "PROSITE Motif" information available for 4MA3)

(no "Exon" information available for 4MA3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d4ma3a1 A:1-112 automated matches                                                                               d4ma3a2 A:113-219 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeee....eeeeeee...hhhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee........eee...eeeeee.......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ma3 A   1 xVLTQTPSSVSAAVGGTVTINCQASQSVYNKNYLAWYQQKPGQPPKRLIYSASTLASGVSSRFKGSGSGTQFTLTISDVQCDDVATYYCLGSYDCNRAECHAFGGGTKVVVEVRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE 219
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
                            |                                                                                                                                                                                                                          
                            1-PCA

Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...ee.....eeeeeeee........eeeeee.....eeeeeee.....eee.hhhh..eeeeeee..eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ma3 B   1 xSVEESGGRLVTPGTPLTLTCTVSGFSLSSYPMNWVRQAPGKGLEWIGGIGTSGNIWYASWAKGRFIISRASSTTVDLKVTSPTTEDTATYFCARGLYNDYTVWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 215
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     
                            1-PCA

Chain H from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...ee.....eeeeeeee........eeeeee.....eeeeeee.....eee.......eeeeeee..eeeeee...hhhhheeeeeee.......ee...eeeee........eeeee..hhh.ee..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ma3 H   1 xSVEESGGRLVTPGTPLTLTCTVSGFSLSSYPMNWVRQAPGKGLEWIGGIGTSGNIWYASWAKGRFIISRASSTTVDLKVTSPTTEDTATYFCARGLYNDYTVWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS 216
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
                            1-PCA

Chain L from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d4ma3l1 L:1-112 automated matches                                                                               d4ma3l2 L:113-219 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeee....eeeeeee...hhhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee........eee...eeeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ma3 L   1 xVLTQTPSSVSAAVGGTVTINCQASQSVYNKNYLAWYQQKPGQPPKRLIYSASTLASGVSSRFKGSGSGTQFTLTISDVQCDDVATYYCLGSYDCNRAECHAFGGGTKVVVEVRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE 219
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
                            1-PCA

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: Immunoglobulin (5995)

Family: automated matches (864)

Protein domain: automated matches (864)

Rabbit (Oryctolagus cuniculus) [TaxId: 9986] (10)

1a	d4ma3a1	A:1-112
1b	d4ma3a2	A:113-219
1c	d4ma3l1	L:1-112
1d	d4ma3l2	L:113-219

(no "CATH Domain" information available for 4MA3)

(no "Pfam Domain" information available for 4MA3)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4MA3)

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	Cis Peptide Bonds
		Glu B:149 - Pro B:150	[ RasMol ]
		Glu H:149 - Pro H:150	[ RasMol ]
		Phe B:147 - Pro B:148	[ RasMol ]
		Phe H:147 - Pro H:148	[ RasMol ]
		Thr A:6 - Pro A:7	[ RasMol ]
		Thr L:6 - Pro L:7	[ RasMol ]
		Tyr A:146 - Pro A:147	[ RasMol ]
		Tyr L:146 - Pro L:147	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (6, 6)

SS Bonds (10, 10)

Cis Peptide Bonds (8, 8)

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