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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL SEGMENT OF FANCM IN COMPLEX WITH FAAP24
 
Authors :  H. Yang, T. Zhang, L. Tong, J. Ding
Date :  11 Aug 13  (Deposition) - 02 Oct 13  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fancm, Faap24, Xpf/Mus81, Fanconi Anemia, Dna Repair, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, T. Zhang, Y. Tao, F. Wang, L. Tong, J. Ding
Structural Insights Into The Functions Of The Fancm-Faap24 Complex In Dna Repair.
Nucleic Acids Res. V. 41 10573 2013
PubMed-ID: 24003026  |  Reference-DOI: 10.1093/NAR/GKT788

(-) Compounds

Molecule 1 - FANCONI ANEMIA GROUP M PROTEIN
    Chains: A
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21(DE3) CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1813-2031
    Gene: FANCM, KIAA1596
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN FACM, ATP-DEPENDENT RNA HELICASE FANCM, FANCONI ANEMIA-ASSOCIATED POLYPEPTIDE OF 250 KDA, FAAP250, PROTEIN HEF ORTHOLOG
 
Molecule 2 - FANCONI ANEMIA-ASSOCIATED PROTEIN OF 24 KDA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 17-215
    Gene: FAAP24, C19ORF40
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:1823 , GLY A:1824 , HIS A:1825 , CYS A:1848 , PRO A:1849 , LEU A:1850 , ASN A:1851BINDING SITE FOR RESIDUE SO4 A 2101
2AC2SOFTWAREARG A:1893 , LYS A:1955 , ARG B:95BINDING SITE FOR RESIDUE SO4 A 2102
3AC3SOFTWAREGLY B:170 , LYS B:171 , VAL B:172 , LYS B:173BINDING SITE FOR RESIDUE SO4 B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M6W)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:167 -Gly B:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M6W)

(-) Exons   (0, 0)

(no "Exon" information available for 4M6W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhh...eeeee......ee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhhhh...hhhhhhh.hhhhhhhhh....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4m6w A 1815 GKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSVNKNKFIEQIQHLQSMFERICVIVEKDRKSYDSLLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVSEALQFYLSIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVF 2030
                                  1824      1834      1844      1854      1864      1874      1884      1894      1917      1927      1937      1947      1957      1972      1982      1992      2002      2012      2022        
                                                                                                                1902|                                            1964|                                                            
                                                                                                                 1916                                             1970                                                            


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhh.hhhhhhhh....eeee......eeee..eeeeee..........hhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhh..........hhhhhhhhhh.......hhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4m6w B   18 HIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQ  213
                                    27        37        47        57        67        77        87        97       107       117       127       137       153       163       173       183       193       203       213
                                                                                                                                                          146|                                                            
                                                                                                                                                           153
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M6W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M6W)

(-) Gene Ontology  (20, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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    Pro B:167 - Gly B:168   [ RasMol ]  
 

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  4m6w
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  FANCM_HUMAN | Q8IYD8
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  FAP24_HUMAN | Q9BTP7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FANCM_HUMAN | Q8IYD8: 4bxo 4day 4drb 4e45
        FAP24_HUMAN | Q9BTP7: 2lyh 2m9m 2m9n 4bxo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4M6W)