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(-) Description

Title :  CRYSTAL STRUCTURE OF ITK IN COMPLEX WITH COMPOUND 1 [4-(CARBAMOYLAMINO)-1-(NAPHTHALEN-1-YL)-1H-PYRAZOLE-3-CARBOXAMIDE]
 
Authors :  S. Han, N. L. Caspers
Date :  02 Aug 13  (Deposition) - 02 Apr 14  (Release) - 04 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Han, R. M. Czerwinski, N. L. Caspers, D. C. Limburg, W. Ding, H. Wang, J. F. Ohren, F. Rajamohan, T. J. Mclellan, R. Unwalla, C. Choi, M. D. Parikh, N. Seth, J. Edmonds, C. Phillips, S. Shakya, X. Li, V. Spaulding, S. Hughes, A. Cook, C. Robinson, J. P. Mathias, I. Navratilova, Q. G. Medley, D. R. Anderson, R. G. Kurumbail, A. Aulabaugh
Selectively Targeting An Inactive Conformation Of Interleukin-2-Inducible T-Cell Kinase By Allosteric Inhibitors.
Biochem. J. V. 460 211 2014
PubMed-ID: 24593284  |  Reference-DOI: 10.1042/BJ20131139

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE ITK/TSK
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    FragmentUNP RESIDUES 354-620
    GeneITK, EMT, LYK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINTERLEUKIN-2-INDUCIBLE T-CELL KINASE, IL-2-INDUCIBLE T-CELL KINASE, KINASE EMT, T-CELL-SPECIFIC KINASE, TYROSINE-PROTEIN KINASE LYK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1M0Y2Ligand/Ion4-(CARBAMOYLAMINO)-1-(NAPHTHALEN-1-YL)-1H-PYRAZOLE-3-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:370 , SER A:371 , GLY A:372 , ALA A:389 , LYS A:391 , GLU A:436 , PHE A:437 , MET A:438 , GLU A:439 , GLY A:441 , CYS A:442 , LEU A:489 , HOH A:942BINDING SITE FOR RESIDUE M0Y A 701
2AC2SOFTWAREPHE A:403 , ALA A:407 , MET A:410 , LEU A:413 , VAL A:419 , GLN A:420 , LEU A:421 , PHE A:435 , SER A:499 , ASP A:500 , PHE A:501 , PHE A:506 , HOH A:824 , HOH A:858BINDING SITE FOR RESIDUE M0Y A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M0Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:429 -Pro A:430

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M0Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M0Y)

(-) Exons   (0, 0)

(no "Exon" information available for 4M0Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains d4m0ya_ A: Tyrosine-protein kinase Itk/Tsk                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee...eeeeeeee.....hhhhhhhhhhhhh.........eeeee.....eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee...hhhhh..hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m0y A 356 WVIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 618
                                   365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M0Y)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITK_HUMAN | Q088811sm2 1snu 1snx 2e6i 2lmj 2yuq 3miy 3mj1 3mj2 3qgw 3qgy 3t9t 3v5j 3v5l 3v8t 3v8w 4hct 4hcu 4hcv 4kio 4l7s 4m0z 4m12 4m13 4m14 4m15 4mf0 4mf1 4pp9 4ppa 4ppb 4ppc 4pqn 4qd6 4rfm

(-) Related Entries Specified in the PDB File

4m0z 4m12 4m13 4m14 4m15