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(-) Description

Title :  STRUCTURE OF GAS PERR-ZN-ZN
 
Authors :  C. S. Lin, S. Y. Chao, J. C. Nix, H. L. Tseng, C. C. Tsou, C. H. Fei, H. S. Ciou U. S. Jeng, Y. S. Lin, W. J. Chuang, J. J. Wu, S. Wang
Date :  11 Jul 13  (Deposition) - 02 Apr 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Factor, Zinc Binding, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. S. Lin, S. Y. Chao, M. Hammel, J. C. Nix, H. L. Tseng, C. C. Tsou, C. H. Fei, H. S. Chiou, U. S. Jeng, Y. S. Lin, W. J. Chuang, J. J. Wu, S. Wang
Distinct Structural Features Of The Peroxide Response Regulator From Group A Streptococcus Drive Dna Binding
Plos One V. 9 89027 2014
PubMed-ID: 24586487  |  Reference-DOI: 10.1371/JOURNAL.PONE.0089027

(-) Compounds

Molecule 1 - PEROXIDE STRESS REGULATOR PERR, FUR FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SPF
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1138874
    Strain: NS88.2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:4 , HIS A:6 , ASN A:15 , HIS A:19 , HIS A:97 , HIS A:99BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:104 , CYS A:107 , CYS A:144 , CYS A:147BINDING SITE FOR RESIDUE ZN A 202
3AC3SOFTWAREHIS B:4 , HIS B:6 , ASN B:15 , HIS B:19 , HIS B:97 , HIS B:99BINDING SITE FOR RESIDUE ZN B 201
4AC4SOFTWARECYS B:104 , CYS B:107 , CYS B:144 , CYS B:147BINDING SITE FOR RESIDUE ZN B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LMY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LMY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LMY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LMY)

(-) Exons   (0, 0)

(no "Exon" information available for 4LMY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains d4lmya_ A: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhh..eeee........eeee...eeeeeee.....eeeeee.hhhhhhhhhhhhhh.eeee....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmy A   1 MDIHSHQQALDAYENVLEHLREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGHQHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDCQA 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains d4lmyb_ B: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhh......hhhhhhhhhhhhhhh..eeee........eeee...eeeeeee.....eeeeee.hhhhhhhhhhhhhh.eeee....eeeehhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmy B   1 MDIHSHQQALDAYENVLEHLREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGHQHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDCQAKDQPDFLE 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LMY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LMY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4LMY)

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 Related Entries

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