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(-) Description

Title :  STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM RICKETTSIA FELIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  15 Jun 13  (Deposition) - 26 Jun 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Niaid, National Institute Of Allergy And Infectious Diseases, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Clifton, J. A. Abendroth
Structure Of A Putative Oxidoreductase From Rickettsia Feli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIFEA.00250.A
    Chains: A, B, C, D
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RF_1132
    Organism Scientific: RICKETTSIA FELIS
    Organism Taxid: 315456
    Strain: ATCC VR-1525 / URRWXCAL2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3SCN3Ligand/IonTHIOCYANATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3SCN1Ligand/IonTHIOCYANATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN-1Ligand/IonFLAVIN MONONUCLEOTIDE
3SCN2Ligand/IonTHIOCYANATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:85BINDING SITE FOR RESIDUE CL A 202
2AC2SOFTWARETHR A:36 , ALA A:37 , SER A:38 , SER A:39 , CYS A:53 , LEU A:54 , ASN A:55 , TYR A:151 , TYR A:156 , HOH A:379BINDING SITE FOR RESIDUE FMN A 203
3AC3SOFTWARESER B:44BINDING SITE FOR RESIDUE CL B 201
4AC4SOFTWARETYR B:116 , ASN B:139 , THR B:140 , HOH B:342BINDING SITE FOR RESIDUE SCN B 202
5AC5SOFTWARETHR B:36 , ALA B:37 , SER B:38 , SER B:39 , CYS B:53 , LEU B:54 , ASN B:55 , HIS B:130 , TYR B:151 , TYR B:156BINDING SITE FOR RESIDUE FMN B 203
6AC6SOFTWAREALA B:-6 , TYR C:116 , ALA C:141BINDING SITE FOR RESIDUE SCN C 201
7AC7SOFTWARESER D:44BINDING SITE FOR RESIDUE CL D 201
8AC8SOFTWARETYR D:116 , ASN D:139 , THR D:140 , ALA D:141 , HOH D:311 , HOH D:321BINDING SITE FOR RESIDUE SCN D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L82)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:46 -Pro A:47
2Lys B:46 -Pro B:47
3Lys C:46 -Pro C:47
4Lys D:46 -Pro D:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L82)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L82)

(-) Exons   (0, 0)

(no "Exon" information available for 4L82)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4l82a_ A: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh...ee.eeeeeee..eeeeeee...eeee....eeeeeee....hhhhhhhh.eeeeee....hhhhhhhhhh..........eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l82 A   5 VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ 160
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154      


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4l82b_ B: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhh...ee.eeeeee....eeeeee...eeee....eeeeeee....hhhhhhhh.eeeeee....hhhhhhhhhh..........eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee......eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l82 B  -6 AHHHHHHMAGTVTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ 160
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       


Chain C from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4l82c_ C: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh...ee.eeeeeee..eeeeeee...eeee....eeeeeee....hhhhhhhh.eeeeee.hhhhhhhhhhhhh..........eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l82 C   5 VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ 160
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154      


Chain D from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains d4l82d_ D: automated matches                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh...ee.eeeeeee..eeeeeee...eeee....eeeeeee....hhhhhhhh.eeeeee....hhhhhhhhhh..........eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l82 D   5 VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISKHFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ 160
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L82)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L82)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  4l82
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