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(-) Description

Title :  CU/ZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS
 
Authors :  D. S. Shin, M. Didonato, A. J. Pratt, C. K. Bruns, D. E. Cabelli, J. S. Krol C. A. Belzer, L. B. Tabatabai, J. A. Tainer, E. D. Getzoff
Date :  30 May 13  (Deposition) - 23 Oct 13  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Superoxide Dismutase, Brucella Abortus, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Pratt, M. Didonato, D. S. Shin, D. E. Cabelli, C. K. Bruns, C. A. Belzer, A. R. Gorringe, P. R. Langford, L. B. Tabatabai, J. S. Kroll, J. A. Tainer, E. D. Getzoff
Structural, Functional, And Immunogenic Insights On Cu, Zn Superoxide Dismutase Pathogenic Virulence Factors From Neisseria Meningitidis And Brucella Abortus.
J. Bacteriol. V. 197 3834 2015
PubMed-ID: 26459556  |  Reference-DOI: 10.1128/JB.00343-15

(-) Compounds

Molecule 1 - SUPEROXIDE DISMUTASE [CU-ZN]
    Chains: A
    EC Number: 1.15.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 20-173
    Gene: SODC, BRUAB2_0527
    Organism Scientific: BRUCELLA ABORTUS
    Organism Taxid: 235

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
2CU1Ligand/IonCOPPER (II) ION
1CU11Ligand/IonCOPPER (I) ION
3GOL1Ligand/IonGLYCEROL
4SO41Ligand/IonSULFATE ION
5ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:48 , HIS A:50 , HIS A:73 , HIS A:128 , HOH A:562BINDING SITE FOR RESIDUE CU1 A 201
2AC2SOFTWAREHIS A:48 , HIS A:50 , HIS A:73 , HIS A:128 , HOH A:562BINDING SITE FOR RESIDUE CU A 202
3AC3SOFTWAREHIS A:73 , HIS A:82 , HIS A:90 , ASP A:93BINDING SITE FOR RESIDUE ZN A 203
4AC4SOFTWAREPRO A:76 , ARG A:123 , HOH A:348 , HOH A:447 , HOH A:474 , HOH A:529BINDING SITE FOR RESIDUE SO4 A 204
5AC5SOFTWARETHR A:3 , THR A:4 , HOH A:426BINDING SITE FOR RESIDUE GOL A 205

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:55 -A:150

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:137 -Pro A:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L05)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L05)

(-) Exons   (0, 0)

(no "Exon" information available for 4L05)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains d4l05a_ A: Cu,Zn superoxide dismutase, SOD                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..eeeeeeeeeeee.....eeeeeee.....eee.eeee.......eee..eee.hhhhh.........................eee.....eeeeeee....hhhhhh.eeeeee..........hhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l05 A   1 ESTTVKMYEALPTGPGKEVGTVVISEAPGGLHFKVNMEKLTPGYHGFHVHENPSCAPGEKDGKIVPALAAGGHYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIKQRSLMVHVGGDNYSDKPEPLGGGGARFACGVIE 154
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0 ; only for superseded entry 2AQM: 1,1)

(no "CATH Domain" information available for 4L05, only for superseded entry 2AQM replaced by 4L05)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L05)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:137 - Pro A:138   [ RasMol ]  
 

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  4l05
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2aqn 2aqp 2aqq 2aqr 2aqs 2aqt