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(-) Description

Title :  PAK6 KINASE DOMAIN IN COMPLEX WITH SUNITINIB
 
Authors :  J. Gao, T. J. Boggon
Date :  17 May 13  (Deposition) - 11 Sep 13  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Phosphotransfer, Phosphorylation, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gao, B. H. Ha, H. J. Lou, E. M. Morse, R. Zhang, D. A. Calderwood, B. E. Turk, T. J. Boggon
Substrate And Inhibitor Specificity Of The Type Ii P21-Activated Kinase, Pak6.
Plos One V. 8 77818 2013
PubMed-ID: 24204982  |  Reference-DOI: 10.1371/JOURNAL.PONE.0077818

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 6
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-32
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN
    Gene: PAK6, PAK5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PAK-5, P21-ACTIVATED KINASE 6, PAK-6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1B491Ligand/IonN-[2-(DIETHYLAMINO)ETHYL]-5-[(Z)-(5-FLUORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE
2SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:413 , ALA A:434 , MET A:481 , GLU A:482 , PHE A:483 , LEU A:484 , GLN A:485 , LEU A:533 , SER A:543 , ASP A:544 , HOH A:897 , HOH A:945 , HOH A:956BINDING SITE FOR RESIDUE B49 A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KS8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KS8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KS8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KS8)

(-) Exons   (0, 0)

(no "Exon" information available for 4KS8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4ks8a_ A: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhh.eeeeeeee.....eeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.............hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ks8 A 385 VTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKsLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTGLPECLVPLI 671
                                   394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554     | 564       574       584       594       604       614       624       634       644       654       664       
                                                                                                                                                                                                         560-SEP
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KS8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KS8)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ks8
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  PAK6_HUMAN | Q9NQU5
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK6_HUMAN | Q9NQU5: 2c30 2odb 4ks7

(-) Related Entries Specified in the PDB File

4ks7