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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF2961 FAMILY PROTEIN (BACUNI_00161) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 1.62 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 May 13  (Deposition) - 17 Jul 13  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Pf11175 Family Protein, Duf2961, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bacuni_00161) From Bacteroides Uniformis Atcc 8492 At 1. 62 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Vector Type: PLASMID
    Gene: BACUNI_00161, ZP_02068761.1
    Organism Scientific: BACTEROIDES UNIFORMIS
    Organism Taxid: 411479
    Strain: ATCC 8492

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 35)

Asymmetric Unit (5, 35)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2MSE20Mod. Amino AcidSELENOMETHIONINE
3NA7Ligand/IonSODIUM ION
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5PG44Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (4, 84)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL
2MSE60Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
4PEG9Ligand/IonDI(HYDROXYETHYL)ETHER
5PG412Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:75 , ASP A:78 , ASP A:277 , NA A:502 , HOH A:646 , HOH A:666 , HOH A:687BINDING SITE FOR RESIDUE NA A 501
02AC2SOFTWARETHR A:70 , ASP A:71 , ASP A:78 , ASP A:277 , ILE A:291 , GLY A:292 , NA A:501 , HOH A:646BINDING SITE FOR RESIDUE NA A 502
03AC3SOFTWAREASN A:76 , ASP A:78 , GLU A:275 , ASP A:277 , THR A:293 , HOH A:666 , HOH A:782BINDING SITE FOR RESIDUE NA A 503
04AC4SOFTWARETHR A:106 , TYR A:194 , TRP A:231 , GLU A:296 , ASP A:297 , ALA A:302 , TRP A:303 , HOH A:950BINDING SITE FOR RESIDUE PG4 A 504
05AC5SOFTWAREGLY A:243 , GLU A:244 , PHE A:281 , LYS A:347 , GLU A:417 , HOH A:807 , HOH A:881 , HOH A:930 , ARG B:398BINDING SITE FOR RESIDUE PG4 A 505
06AC6SOFTWARETYR A:124 , ASN A:128 , ARG A:179BINDING SITE FOR RESIDUE PEG A 506
07AC7SOFTWAREGLY B:75 , ASP B:78 , ASP B:277 , NA B:503 , HOH B:634 , HOH B:678 , HOH B:682BINDING SITE FOR RESIDUE NA B 501
08AC8SOFTWARETHR B:241 , PG4 B:506 , HOH B:951BINDING SITE FOR RESIDUE NA B 502
09AC9SOFTWARETHR B:70 , ASP B:71 , ASP B:78 , ASP B:277 , ILE B:291 , GLY B:292 , NA B:501 , HOH B:634BINDING SITE FOR RESIDUE NA B 503
10BC1SOFTWAREASN B:76 , ASP B:78 , GLU B:275 , ASP B:277 , THR B:293 , HOH B:678 , HOH B:772BINDING SITE FOR RESIDUE NA B 504
11BC2SOFTWARETHR B:106 , TYR B:194 , TRP B:231 , GLU B:296 , ASP B:297 , ALA B:302 , TRP B:303 , HOH B:889BINDING SITE FOR RESIDUE PG4 B 505
12BC3SOFTWAREPRO B:72 , THR B:241 , MSE B:279 , LYS B:286 , PRO B:288 , NA B:502BINDING SITE FOR RESIDUE PG4 B 506
13BC4SOFTWAREGLY B:243 , GLU B:244 , VAL B:248 , GLU B:251 , PHE B:281 , LYS B:347 , HOH B:868BINDING SITE FOR RESIDUE 1PE B 507
14BC5SOFTWAREHOH B:773 , HOH B:785BINDING SITE FOR RESIDUE PEG B 508
15BC6SOFTWAREILE B:90 , TYR B:124 , ASN B:128 , ASP B:129 , ARG B:179 , GLU B:181BINDING SITE FOR RESIDUE PEG B 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KQ7)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:108 -Pro A:109
2Pro A:111 -Pro A:112
3Pro A:160 -Glu A:161
4Ala B:108 -Pro B:109
5Pro B:111 -Pro B:112
6Pro B:160 -Glu B:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KQ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KQ7)

(-) Exons   (0, 0)

(no "Exon" information available for 4KQ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeeeee...................eeeeeee...eeeeeeeeeee......hhh.eeeeeee.......eeeehhhhh.........ee...eeee.....eeee...eee...eeeeeee.......eeeeeeeeee.........eeeeeeeeee........hhhhh.............eeeeeee..eeeeeeeeeeee..........eeeee.......ee..hhhhhh.........eee..eeeee........eeeeeeee.....eee..eeeeee..hhhhh...eeeeeeeeee.....................hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kq7 A  45 QSNmTNEmFDLAKLKSGVKNKRISSTDPTGGNRDHLEPFKPGEKRIIADIKGmGVINHIWVTIAPPPPTLSRNDIIIRmYWDGNDYPSVESPIGPFFGQGWDERYNYASLPLSAGPENGTGLSCYFAmPFEKGARIEIENQSDRNIDAFYFYVDYLEmAKLPKDmGRFHAWYNHNLTEALPEGETEWGVTGAQKPNTTGERNYVFmETQGKGHFVGINYYVHCPTPmWYGEGDDmWFIDGEKVPSLIGTGTEDFFNTAWCPKEAFSHPYFGYPRVNNDIGWLGRTHVYRFFIEDPIFFEKSLKGTIEHGSNNNLTLDLSTVAYWYQDSAVALPEAPTKAQRAPKPFINHVDIHRWRDAWRKSKGNKATLWGNE 417
                               |   |54        64        74        84        94  |    104       114       124       134       144       154       164       174       184       194       204    |  214       224       234       244     | 254       264      |274    |  284       294       304       314       324       334       344       354       364       374       384       394       404       414   
                               |   |                                           97-MSE                   123-MSE                                          172-MSE                       202-MSE  |                                      250-MSE              271-MSE 279-MSE                                                                                                                                      
                              48-MSE                                                                                                                                                          209-MSE                                                                                                                                                                                                            
                                  52-MSE                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeeeee...................eeeeeee...eeeeeeeeeee......hhh.eeeeeee.......eeeehhhhh.........ee...eeee.....eeee...eee...eeeeeee.......eeeeeeeeee.........eeeeeeeeee........hhhhh.............eeeeeee..eeeeeeeeeeee..........eeeee.......ee..hhhhhh.........eee..eeeee........eeeeeeee.....eee..eeeeee..hhhhh...eeeeeeeeee.....................hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kq7 B  45 QSNmTNEmFDLAKLKSGVKNKRISSTDPTGGNRDHLEPFKPGEKRIIADIKGmGVINHIWVTIAPPPPTLSRNDIIIRmYWDGNDYPSVESPIGPFFGQGWDERYNYASLPLSAGPENGTGLSCYFAmPFEKGARIEIENQSDRNIDAFYFYVDYLEmAKLPKDmGRFHAWYNHNLTEALPEGETEWGVTGAQKPNTTGERNYVFmETQGKGHFVGINYYVHCPTPmWYGEGDDmWFIDGEKVPSLIGTGTEDFFNTAWCPKEAFSHPYFGYPRVNNDIGWLGRTHVYRFFIEDPIFFEKSLKGTIEHGSNNNLTLDLSTVAYWYQDSAVALPEAPTKAQRAPKPFINHVDIHRWRDAWRKSKGNKATLWGNE 417
                               |   |54        64        74        84        94  |    104       114       124       134       144       154       164       174       184       194       204    |  214       224       234       244     | 254       264      |274    |  284       294       304       314       324       334       344       354       364       374       384       394       404       414   
                              48-MSE                                           97-MSE                   123-MSE                                          172-MSE                       202-MSE  |                                      250-MSE              271-MSE 279-MSE                                                                                                                                      
                                  52-MSE                                                                                                                                                      209-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KQ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KQ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KQ7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KQ7)

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  Cis Peptide Bonds
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    Pro A:111 - Pro A:112   [ RasMol ]  
    Pro A:160 - Glu A:161   [ RasMol ]  
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