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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AZIDE AND IRON SUBSTITUTED CLOSTRIUM DIFFICILE SOD2 COMPLEX
 
Authors :  W. Li, T. L. Ying, C. L. Wang, Y. Zhao, H. F. Wang, X. S. Tan
Date :  01 Apr 13  (Deposition) - 02 Apr 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rossmann Fold, Superoxide Dismutase, Metal Ion Binding, Cytosol, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Li, T. L. Ying, C. L. Wang, Y. Zhao, H. F. Wang, X. S. Tan
Crystal Structure Of The Azide And Iron Substituted Clostrium Difficile Sod2 Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUPEROXIDE DISMUTASE
    ChainsA
    EC Number1.15.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMAL-C2X
    Expression System StrainROSSETA(DE3)PLYS S
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 27-234
    GeneCD630_16310, SODA
    Organism ScientificCLOSTRIDIUM DIFFICILE
    Organism Taxid272563
    Strain630

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1AZI1Ligand/IonAZIDE ION
2FE1Ligand/IonFE (III) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AZI2Ligand/IonAZIDE ION
2FE-1Ligand/IonFE (III) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:56 , HIS A:111 , ASP A:193 , HIS A:197 , HOH A:407BINDING SITE FOR RESIDUE FE A 301
2AC2SOFTWARETHR A:99 , ARG A:102BINDING SITE FOR RESIDUE AZI A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JYY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:45 -Pro A:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JYY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JYY)

(-) Exons   (0, 0)

(no "Exon" information available for 4JYY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains d4jyya1 A:29-120 automated matches                                                          d4jyya2 A:121-230 automated matches                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeee...hhhhhh.eeeeeee.hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jyy A  29 NNKFKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNLDSLPKDIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEAIDRDFGSFEKFKQEFQKSALDVFGSGWAWLVATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWEHAYYLKYQNRRNEYIDNWFNVVNWNGALENYKNL 230
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JYY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JYY)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q186I6_PEPD6 | Q186I63tjt 4jz2 4jzg

(-) Related Entries Specified in the PDB File

3tjt HOMOLOUGE
4jz2
4jzg