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(-) Description

Title :  THE X-RAY CRYSTAL STRUCTURE OF A THERMOPHILIC CELLOBIOSE BINDING PROTEIN BOUND WITH LAMINARIPENTAOSE
 
Authors :  P. Munshi, M. J. Cuneo
Date :  22 Mar 13  (Deposition) - 09 Oct 13  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Periplasmic Binding Protein, Thermophilic Protein, Cellulose, Sugar Binding Protein, Cellopentaose, Laminaribiose, Laminarpentaose Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Munshi, C. B. Stanley, S. Ghimire-Rijal, X. Lu, D. A. Myles, M. J. Cuneo
Molecular Details Of Ligand Selectivity Determinants In A Promiscuous Beta-Glucan Periplasmic Binding Protein.
Bmc Struct. Biol. V. 13 18 2013
PubMed-ID: 24090243  |  Reference-DOI: 10.1186/1472-6807-13-18

(-) Compounds

Molecule 1 - OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE- BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21-RIL
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: TM0031, TM_0031
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1BGC5Ligand/IonBETA-D-GLUCOSE
2CA1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:33 , TYR A:37 , GLN A:142 , HOH A:702 , HOH A:725 , HOH A:737BINDING SITE FOR RESIDUE CA A 606
2AC2SOFTWAREGLY A:12 , TRP A:15 , ASN A:22 , LEU A:23 , ALA A:25 , SER A:28 , THR A:29 , THR A:32 , ASP A:33 , GLN A:34 , ASN A:215 , GLY A:231 , LEU A:232 , PHE A:233 , TRP A:380 , ASP A:382 , TRP A:383 , PHE A:408 , TRP A:426 , TRP A:456 , TRP A:510 , TRP A:535 , HOH A:703 , HOH A:704 , HOH A:729 , HOH A:735 , HOH A:774 , HOH A:803 , HOH A:818 , HOH A:825 , HOH A:829BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 601 TO 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JSO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JSO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JSO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JSO)

(-) Exons   (0, 0)

(no "Exon" information available for 4JSO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:582
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhh.eeeee...................hhhhhh....eeee....eeee..eeeeeeee..eeeeee............hhhhhhhhhhhhhhhh.....hhhhheeeeeeee..eeeeee.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhh.....eeeeeee..eeeeee.....hhhhhh.....eeeee...hhhhhhhhhhh....ee.....hhhhhh......ee..........eeeeeeeee........hhhhhhhhhhh.hhhhhhhhh................hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..ee.....ee.........eeee....hhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh....eeee.........hhhhhhhhhhhhhh................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..eeeeeee...eee...ee.....................hhhhhhee............hhhhh...eehhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jso A   1 SLPREDTVYIGGALWGPATTWNLYAPQSTWGTDQFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYIRPEARWSDGVPITADDFVYALELTKELGIGPGGGWDTYIEYVKAVDTKVVEFKAKEENLNYFQFLSYSLGAQPMPKHVYERIRAQMNIKDWINDKPEEQVVSGPYKLYYYDPNIVVYQRVDDWWGKDIFGLPRPKYLAHVIYKDNPSASLAFERGDIDWNGLFIPSVWELWEKKGLPVGTWYKKEPYFIPDGVGFVYVNNTKPGLSDPAVRKAIAYAIPYNEMLKKAYFGYGSQAHPSMVIDLFEPYKQYIDYELAKKTFGTEDGRIPFDLDMANKILDEAGYKKGPDGVRVGPDGTKLGPYTISVPYGWTDWMMMCEMIAKNLRSIGIDVKTEFPDFSVWADRMTKGTFDLIISWSVGPSFDHPFNIYRFVLDKRLSKPVGEVTWAGDWERYDNDEVVELLDKAVSTLDPEVRKQAYFRIQQIIYRDMPSIPAFYTAHWYEYSTKYWINWPSEDNPAWFRPSPWHADAWPTLFIISKKSDPQPVPSWLGTVDEGGIEIPTAKIFEDLQKAT 582
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JSO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JSO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JSO)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9WXN8_THEMA | Q9WXN8: 2o7i 3i5o 4jsd

(-) Related Entries Specified in the PDB File

2o7i THE SAME PROTEIN BOUND TO CELLOBIOSE
3i5o THE SAME PROTEIN BOUND TO CELLOPENTAOSE
4jsd THE SAME PROTEIN BOUND TO LAMINARIBIOSE