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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA HOLO RIMO IN COMPLEX WITH PENTASULFIDE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VR77
 
Authors :  F. Forouhar, M. Hussain, J. Seetharaman, Y. Fang, C. X. Chen, K. Cunning K. Conover, L. -C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. Northeast Structural Genomics Consortium (Nesg)
Date :  20 Feb 13  (Deposition) - 10 Apr 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Northeast Structural Genomics Consortium, Nesg, Three-Domained Enzyme, Alpha-Beta N-Terminal Domain, Semi-Tim Barrel Radical-Sam Domain, Beta Barrel C-Terminal Tram Domain, Ribosomal Protein S12, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, S. Arragain, M. Atta, S. Gambarelli, J. M. Mouesca, M. Hussain, R. Xiao, S. Kieffer-Jaquinod, J. Seetharaman, T. B. Acton G. T. Montelione, E. Mulliez, J. F. Hunt, M. Fontecave
Two Fe-S Clusters Catalyze Sulfur Insertion By Radical-Sam Methylthiotransferases.
Nat. Chem. Biol. V. 9 333 2013
PubMed-ID: 23542644  |  Reference-DOI: 10.1038/NCHEMBIO.1229

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO
    Chains: A, B
    EC Number: 2.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RIMO, TM1862, TM_1862
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Strain: ATCC 43589
    Synonym: S12 MTTASE, S12 METHYLTHIOTRANSFERASE, RIBOSOME MATURATION FACTOR RIMO

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FS52Ligand/IonIRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FS51Ligand/IonIRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FS51Ligand/IonIRON/SULFUR PENTA-SULFIDE CONNECTED CLUSTERS

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , CYS A:10 , LYS A:12 , ASN A:13 , CYS A:46 , ALA A:47 , PHE A:48 , CYS A:79 , CYS A:148 , ARG A:150 , CYS A:152 , CYS A:155 , ILE A:157 , GLN A:192BINDING SITE FOR RESIDUE FS5 A 501
2AC2SOFTWAREGLY B:9 , CYS B:10 , LYS B:12 , ASN B:13 , CYS B:46 , ALA B:47 , PHE B:48 , CYS B:79 , CYS B:148 , ARG B:150 , CYS B:152 , PHE B:154 , CYS B:155 , ILE B:157 , LYS B:161 , GLN B:192 , HIS B:229BINDING SITE FOR RESIDUE FS5 B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JC0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JC0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JC0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JC0)

(-) Exons   (0, 0)

(no "Exon" information available for 4JC0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhh...............eeeeee.....hhhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhhh....eee...............................eeeeeeee.........hhhhh....ee.hhhhhhhhhhhhhhh...eeeeee.hhhhh........hhhhhhhhhh......eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee................hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jc0 A   2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIETDLVPDRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVILEH 433
                                    11        21        31        41        51        61        71        81        91       101       111||    |129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429    
                                                                                                                                        112|  120|                                                                                                                                                                                                                                                                                                                  
                                                                                                                                         115   127                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhh...............eeeeee.....hhhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhhh....eee...............................eeeeeeee.........hhhhh....ee.hhhhhhhhhhhhhhh...eeeeee.hhhhh........hhhhhhhhhh......eeee...hhhhhhhhhhhhhhhh.....eee......hhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee................hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeee..........eeee.......eeeeeeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jc0 B   3 VGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIETDLVPDRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVIL 431
                                    12        22        32        42        52        62        72        82        92       102       112|    ||130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430 
                                                                                                                                       112|  120|                                                                                                                                                                                                                                                                                                                
                                                                                                                                        115   127
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JC0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JC0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JC0)

(-) Gene Ontology  (13, 13)

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  4jc0
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  RIMO_THEMA | Q9X2H6
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        RIMO_THEMA | Q9X2H6: 2qgq

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