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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CNOT1 MIF4G DOMAIN IN COMPLEX WITH A TTP PEPTIDE
 
Authors :  F. Frank, M. R. Fabian, C. Rouya, N. Siddiqui, W. S. Lai, A. Karetnikov, P. J. Blackshear, N. Sonenberg, B. Nagar
Date :  14 Feb 13  (Deposition) - 08 May 13  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mif4G, Protein-Protein Interaction, Ttp, Cytosol, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. R. Fabian, F. Frank, C. Rouya, N. Siddiqui, W. S. Lai, A. Karetnikov, P. J. Blackshear, B. Nagar, N. Sonenberg
Structural Basis For The Recruitment Of The Human Ccr4-Not Deadenylase Complex By Tristetraprolin.
Nat. Struct. Mol. Biol. V. 20 735 2013
PubMed-ID: 23644599  |  Reference-DOI: 10.1038/NSMB.2572

(-) Compounds

Molecule 1 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET28
    Fragment: UNP RESIDUES 800-1004
    Gene: AD-005, CDC39, CNOT1, KIAA1007, NOT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CCR4-ASSOCIATED FACTOR 1, NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 HOMOLOG, NOT1H, HNOT1
 
Molecule 2 - TRISTETRAPROLIN
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 312-326
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TTP, G0/G1 SWITCH REGULATORY PROTEIN 24, GROWTH FACTOR- INDUCIBLE NUCLEAR PROTEIN NUP475, PROTEIN TIS11A, TIS11, ZINC FINGER PROTEIN 36 HOMOLOG, ZFP-36
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J8S)

(-) Sites  (0, 0)

(no "Site" information available for 4J8S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J8S)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:849 -Pro A:850

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J8S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J8S)

(-) Exons   (0, 0)

(no "Exon" information available for 4J8S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j8s A 815 QQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVK 994
                                   824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994


Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4j8s B 314 RRLPIFNRISVS 325
                                   323
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J8S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J8S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J8S)

(-) Gene Ontology  (53, 61)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Pro A:849 - Pro A:850   [ RasMol ]  
 

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  4j8s
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  CNOT1_HUMAN | A5YKK6
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  TTP_HUMAN | P26651
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNOT1_HUMAN | A5YKK6: 4c0d 4cqo 4cru 4crv 4crw 4ct4 4ct6 4ct7 4gmj 4gml 5anr 5fu6 5fu7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4J8S)