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(-) Description

Title :  STRUCTURE OF THE Y184A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
 
Authors :  F. Guerin, B. J. Laventie, G. Prevost, L. Mourey, L. Maveyraud
Date :  29 Jan 13  (Deposition) - 29 Jan 14  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Bi-Component Leucotoxin, Staphylococcus Aureus, S Component Leucocidin, Beta-Barrel Pore Forming Toxin, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. J. Laventie, F. Guerin, L. Mourey, M. Y. Tawk, E. Jover, L. Maveyraud G. Prevost
Residues Essential For Panton-Valentine Leukocidin S Component Binding To Its Cell Receptor Suggest Both Plasticity And Adaptability In Its Interaction Surface
Plos One V. 9 92094 2014
PubMed-ID: 24643034  |  Reference-DOI: 10.1371/JOURNAL.PONE.0092094
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUKS-PV
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-312
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS PHAGE PVL
    Organism Taxid: 71366

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:77 , ASN A:85 , ASP A:86 , PRO A:87 , GLU A:145 , GLU A:147 , ASN A:150 , LYS A:152 , GLY A:157 , LYS A:159 , HOH A:503BINDING SITE FOR RESIDUE MES A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IYT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IYT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IYT)

(-) Exons   (0, 0)

(no "Exon" information available for 4IYT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4iyta_ A: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee....eeeeeeeeeeee....eeeeeeeeeeeee...eeee......eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eee........eeeeeeee...eeeeeeeee..eeeeeeee.eee....eee...............hhhhhh.hhhhhhhhhhhee...eeeeeeee.....eeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iyt A   3 NIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPASQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    12        22        32        42        52        62        72        82        92       102       112       126       136       146       156       166       176       186       196       206       216       226       236       249       259       269       279     
                                                                                                                                                121|                                                                                                                   244|                                    
                                                                                                                                                 126                                                                                                                    248
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IYT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IYT)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  4iyt
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O80066_9CAUD | O80066: 1t5r
UniProtKB/TrEMBL
        O80066_9CAUD | O80066: 4iya 4iyc 4izl 4j0o

(-) Related Entries Specified in the PDB File

1pvl STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM STAPHYLOCOCCUS AUREUS
1t5r STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4iya STRUCTURE OF THE Y250A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4iyc STRUCTURE OF THE T244A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4izl STRUCTURE OF THE N248A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4j0o STRUCTURE OF THE Y246A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS