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(-) Description

Title :  STRUCTURE OF THE Y250A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
 
Authors :  L. Maveyraud, F. Guerin, B. J. Laventie, G. Prevost, L. Mourey
Date :  28 Jan 13  (Deposition) - 29 Jan 14  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Staphylococcus Aureus, S Component Leucocidin, Bi-Component Leucotoxin, Beta-Barrel Pore Forming Toxin, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. J. Laventie, F. Guerin, L. Mourey, M. Y. Tawk, E. Jover, L. Maveyraud G. Prevost
Residues Essential For Panton-Valentine Leukocidin S Component Binding To Its Cell Receptor Suggest Both Plasticity And Adaptability In Its Interaction Surface
Plos One V. 9 92094 2014
PubMed-ID: 24643034  |  Reference-DOI: 10.1371/JOURNAL.PONE.0092094
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUKS-PV
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-312
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS PHAGE PVL
    Organism Taxid: 71366

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2FLC2Ligand/IonCITRATE ANION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:24 , TRP A:25 , LYS A:57 , THR A:59 , ARG A:73 , ARG A:263 , HOH A:469 , HOH A:596 , HOH A:635BINDING SITE FOR RESIDUE FLC A 301
2AC2SOFTWARETYR A:61 , TYR A:63 , LYS A:64 , VAL A:236 , HIS A:238 , ILE A:256 , ALA A:259 , PHE A:260 , HOH A:527BINDING SITE FOR RESIDUE FLC A 302
3AC3SOFTWARELYS A:40 , TYR A:41 , ASN A:42 , GLY A:114 , LYS A:218 , GLY A:219 , HOH A:544BINDING SITE FOR RESIDUE EDO A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IYA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IYA)

(-) Exons   (0, 0)

(no "Exon" information available for 4IYA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4iyaa_ A: automated matches                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeeeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeeee...eeee.hhh..eeeeeeeeeeeeeeee....eeeeeee........eeeeeeeee...eeeeee.........eeeeeeee...eeeeeeeee..eeeeeeee.eeee..eeee...............hhhhhh.hhhhhhhhhhhee...eeeeeeee.....eeeeeeeeeeeeeeeeee...........eeeeeeeeeeeeeeeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iya A   2 NNIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSALEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN 284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IYA)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu A:95 - Pro A:96   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O80066_9CAUD | O80066: 1t5r
UniProtKB/TrEMBL
        O80066_9CAUD | O80066: 4iyc 4iyt 4izl 4j0o

(-) Related Entries Specified in the PDB File

1pvl STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM STAPHYLOCOCCUS AUREUS
1t5r STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4iyc STRUCTURE OF THE T244A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4iyt STRUCTURE OF THE Y184A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4izl STRUCTURE OF THE N248A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS
4j0o STRUCTURE OF THE Y246A MUTANT OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS