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(-) Description

Title :  X-RAY STRUCTURE OF NIFS-LIKE PROTEIN FROM RICKETTSIA AFRICAE ESF-5
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 Jan 13  (Deposition) - 27 Feb 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Nifs-Like Protein, Pyridoxal Phosphate, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), J. Abendroth, B. Sankaran, D. Fox Iii, D. Lorimer, T. E. Edwards
X-Ray Structure Of Nifs-Like Protein From Rickettsia Africa Esf-5
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NIFS-LIKE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: RIAFA.00081.A.B1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPL1
    Organism Scientific: RICKETTSIA AFRICAE
    Organism Taxid: 347255
    Strain: ESF-5

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:81 , TYR A:84 , TYR A:104 , PRO B:216 , MET B:217BINDING SITE FOR RESIDUE EDO A 401
2AC2SOFTWAREPRO A:216 , MET A:217 , LYS B:81 , TYR B:84 , TYR B:104BINDING SITE FOR RESIDUE EDO B 401
3AC3SOFTWAREASP B:368 , HOH B:581 , HOH B:616 , HOH B:619 , HOH B:626 , HOH B:651BINDING SITE FOR RESIDUE CA B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IXO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IXO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IXO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IXO)

(-) Exons   (0, 0)

(no "Exon" information available for 4IXO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee.........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeee.hhhhhhhhhhhh....eeeee...hhhhhhhhhh...eeee........hhhhhhhhhhhh....eeee............hhhhhhhhhhhh..eeeee..........hhhhhh..eeeee.hhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee..........eeeee....hhhhhhhhhhhh.ee.....hhhhhh..hhhhhh..eeee.....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ixo A   0 HMIYLDHNATTFIDPRVKEFIISLMDKELNPSSAHSSGRFAKNLIETVRAQIATALGITLSSREYDITFTSSGTEGNNLIMKNFYDGDIFISAIEHLSIYNHINYAPNIKVISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHSDLVQGFGRIPINIKALGLDFATISGHkIGGGQGGAALISSSNFQITPMIIGGGQEKSVRSGTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKLKKYPNVNIVSNNVARLPNTTLITIPNTDAQAKLIGFDLHNICVSSGSHVLTNMGVGEEEAKSSIRISLSHTNTVRDIEAFIEAFEEIYDV 369
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189      |199       209       219       229       239       249       259       269       279       289       299       309     ||329       339       349       359       369
                                                                                                                                                                                                                              196-LLP                                                                                                                315|                                           
                                                                                                                                                                                                                                                                                                                                                      326                                           


Chain B from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeee.hhhhhhhhhhhh....eeeee...hhhhhhhhhh...eeee........hhhhhhhhhhhh....eeee............hhhhhhhhhhhh..eeeee..........hhhhhh..eeeee.hhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee..........eeeee....hhhhhhhhhhhh.ee.....hhhhhh..hhhhhh..eeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ixo B   1 MIYLDHNATTFIDPRVKEFIISLMDKELNPSSAHSSGRFAKNLIETVRAQIATALGITLSSREYDITFTSSGTEGNNLIMKNFYDGDIFISAIEHLSIYNHINYAPNIKVISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHSDLVQGFGRIPINIKALGLDFATISGHkIGGGQGGAALISSSNFQITPMIIGGGQEKSVRSGTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKLKKYPNVNIVSNNVARLPNTTLITIPNTDAQAKLIGFDLHNICVSSGSHVLTNMGVGEEEAKSSIRISLSHTNTVRDIEAFIEAFEEIYDVIPS 372
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190     | 200       210       220       230       240       250       260       270       280       290       300       310    || 330       340       350       360       370  
                                                                                                                                                                                                                             196-LLP                                                                                                                315|                                              
                                                                                                                                                                                                                                                                                                                                                     326
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IXO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IXO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IXO)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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