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(-) Description

Title :  CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA ARGINASE
 
Authors :  E. L. D'Antonio, B. Ullman, S. C. Roberts, U. Gaur Dixit, M. E. Wilson, Y D. W. Christianson
Date :  19 Jan 13  (Deposition) - 30 Jan 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Arginase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. L. D'Antonio, B. Ullman, S. C. Roberts, U. G. Dixit, M. E. Wilson, Y. Hai, D. W. Christianson
Crystal Structure Of Arginase From Leishmania Mexicana And Implications For The Inhibition Of Polyamine Biosynthesis I Parasitic Infections.
Arch. Biochem. Biophys. V. 535 163 2013
PubMed-ID: 23583962  |  Reference-DOI: 10.1016/J.ABB.2013.03.015

(-) Compounds

Molecule 1 - ARGINASE
    ChainsA
    EC Number3.5.3.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET200/D-TOPO
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 13-329
    GeneARG
    Organism ScientificLEISHMANIA MEXICANA
    Organism Taxid5665

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MN2Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:212 , ASP A:215 , ARG A:266 , LEU A:269 , PHE A:270 , GLU A:273 , LEU A:319BINDING SITE FOR RESIDUE GOL A 501
2AC2SOFTWAREHIS A:114 , ASP A:137 , ASP A:141 , ASP A:243 , MN A:503 , HOH A:642 , HOH A:658BINDING SITE FOR RESIDUE MN A 502
3AC3SOFTWAREASP A:137 , HIS A:139 , ASP A:243 , ASP A:245 , MN A:502 , HOH A:658BINDING SITE FOR RESIDUE MN A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ITY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:111 -Gly A:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ITY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ITY)

(-) Exons   (0, 0)

(no "Exon" information available for 4ITY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4itya_ A: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh...ee..eehhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh.....eeeee...............hhhhhhhhhhh..hhhhhhhhhh......hhh.eeeeee...hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh.......eeeeee.hhh................hhhhhhhhhhhhhhhh.eeeeeee........hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ity A  13 KKMSIVLAPFSGGQPHSGVELGPDYLLKQGLQQDMEKLGWDTRLERVFDGKVVEARKASDNGDRIGRVKRPRLTAECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVLSVHPDAGVIWVDAHADINTMSGTVSGNLHGCPLSILLGLDRENIPECFSWVPQVLKPNKIAYIGLRAVDDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAIEAVSPKGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERIAECGRLVALDVVECNPLLAATESHVNDTISVGCAIARCMMGETLLYT 322
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ITY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ITY)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6TUJ5_LEIME | Q6TUJ54iu0 4iu1 4iu4 4iu5 5hj9 5hja

(-) Related Entries Specified in the PDB File

2pha HUMAN ARGINASE I (HAI)
4iu0 LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH INHIBITOR ABH
4iu1 LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH INHIBITOR NOR- NOHA
4iu4 LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH INHIBITOR BEC
4iu5 LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH CATALYTIC PRODUCT L-ORNITHINE